Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 0.0e+00 1257.7 711 100.0
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 0.0e+00 1246.5 711 99.3
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1142.9 709 92.1
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 5.2e-288 994.2 728 78.2
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 1.7e-275 952.6 762 75.1
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 5.1e-227 791.6 748 67.4
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 6.6e-227 791.2 733 63.6
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 8.7e-227 790.8 743 62.0
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 9.0e-224 780.8 745 64.6
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 1.5e-223 780.0 749 62.6
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 2.6e-223 779.2 756 63.9
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 1.3e-222 776.9 799 64.5
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 1.3e-222 776.9 746 66.5
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 2.2e-222 776.2 733 62.8
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.9e-222 775.8 719 64.3
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 8.4e-222 774.2 736 64.4
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 8.4e-222 774.2 829 59.6
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 1.4e-221 773.5 746 63.1
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 1.8e-219 766.5 831 56.9
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 8.7e-219 764.2 814 58.8
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 1.1e-218 763.8 740 62.8
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 3.1e-216 755.7 733 62.8
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 5.3e-216 755.0 754 62.3
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-214 749.6 833 57.3
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.2e-214 749.6 833 57.3
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 4.9e-214 748.4 813 58.1
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 4.9e-214 748.4 813 58.1
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 1.1e-213 747.3 833 57.1
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.4e-213 746.9 745 59.9
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 7.1e-213 744.6 832 58.1
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 7.1e-213 744.6 756 63.8
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 2.1e-212 743.0 735 62.0
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 2.7e-212 742.7 727 63.1
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 1.8e-211 740.0 832 57.0
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 1.9e-210 736.5 734 64.3
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.7e-209 732.3 732 62.4
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 3.1e-208 729.2 743 63.8
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 2.6e-207 726.1 732 63.3
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 4.5e-207 725.3 898 55.6
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 1.3e-206 723.8 728 60.2
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 3.2e-205 719.2 782 57.2
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 2.7e-204 716.1 789 59.9
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 1.8e-203 713.4 789 59.4
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 1.5e-202 710.3 745 60.1
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 7.4e-202 708.0 750 58.1
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 6.9e-200 701.4 719 60.1
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.4e-197 693.7 732 59.8
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.2e-196 690.6 665 65.1
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 3.6e-196 689.1 824 55.8
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 6.3e-193 678.3 647 62.3
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 4.5e-191 672.2 810 57.4
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 1.2e-188 664.1 773 56.0
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.3e-187 659.8 812 48.9
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 2.0e-186 656.8 783 49.8
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 4.4e-186 655.6 807 50.4
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 1.3e-185 654.1 720 55.4
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 4.8e-185 652.1 654 60.2
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.4e-184 650.6 783 49.9
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 6.5e-182 641.7 757 54.7
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 2.0e-178 630.2 623 57.6
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 2.0e-178 630.2 741 52.4
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 2.6e-178 629.8 674 53.7
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 3.7e-177 625.9 710 56.3
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 6.1e-172 608.6 555 59.6
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 6.8e-171 605.1 812 48.8
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 4.1e-168 595.9 766 51.6
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 9.1e-168 594.7 771 52.4
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 2.7e-167 593.2 613 57.9
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 3.8e-166 589.3 772 52.1
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 6.5e-166 588.6 773 53.6
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 3.2e-165 586.3 361 82.0
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 1.2e-164 584.3 771 51.6
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 1.2e-164 584.3 775 51.2
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 1.2e-164 584.3 772 51.2
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 3.6e-164 582.8 667 50.7
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 1.0e-163 581.3 621 54.6
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 1.8e-163 580.5 811 47.2
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 5.7e-162 575.5 732 47.5
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 7.5e-162 575.1 724 51.8
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 1.7e-161 573.9 771 49.5
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.8e-160 570.5 875 43.1
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 2.4e-160 570.1 654 50.6
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 4.1e-160 569.3 725 51.6
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 2.0e-159 567.0 785 48.9
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 1.0e-158 564.7 552 58.0
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 3.8e-158 562.8 393 72.5
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 7.8e-151 538.5 782 47.3
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 3.0e-150 536.6 663 49.2
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 7.3e-149 531.9 552 54.2
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 1.0e-147 528.1 733 47.3
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 2.2e-145 520.4 668 51.0
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 2.3e-142 510.4 549 53.7
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 2.1e-140 503.8 540 60.0
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 3.5e-127 459.9 758 42.9
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 1.5e-122 444.5 657 45.1
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.7e-121 441.0 573 47.3
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 6.0e-111 406.0 643 50.1
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 6.4e-105 386.0 667 46.2
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 7.4e-93 345.9 357 50.1
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 8.2e-92 342.4 229 75.1
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 1.8e-91 341.3 357 48.7
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.9e-88 331.3 357 50.1
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.2e-79 302.0 355 47.0
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 4.2e-72 276.9 184 73.9
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 5.5e-72 276.6 184 73.9
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 3.0e-70 270.8 436 51.1
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 3.2e-48 197.6 509 34.0
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 3.6e-47 194.1 252 46.8
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 2.3e-46 191.4 104 88.5
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 3.1e-43 181.0 105 82.9
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 7.0e-43 179.9 104 82.7
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.2e-39 169.1 104 78.8
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 6.8e-38 163.3 156 56.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.6e-37 161.4 92 82.6
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 1.5e-32 145.6 325 38.8
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 8.9e-30 136.3 103 63.1
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 1.3e-28 132.5 111 64.0
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 1.1e-27 129.4 80 76.2
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.4e-27 129.0 120 57.5
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.4e-27 129.0 236 42.4
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.4e-27 128.3 156 48.7
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 1.3e-25 122.5 131 52.7
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 3.0e-25 121.3 104 59.6
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 3.1e-22 111.3 143 46.9
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 1.1e-19 102.8 94 58.5
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 3.5e-18 97.8 111 47.7
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-15 89.4 62 71.0
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 3.1e-14 84.7 219 28.3
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.2e-13 82.8 239 31.8
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 1.7e-09 68.9 52 67.3
Medtr4g113340 Medicago truncatula HOM05D004216 ORTHO05D004926 5.1e-09 67.4 76 55.3
Os09g0410300 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.1e-08 66.2 242 34.3
SHI18922 Sapria himalayana HOM05D004216 ORTHO05D004926 6.2e-07 60.5 38 65.8


User provided reference genes

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