Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1407.5 719 100.0
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 0.0e+00 1406.3 719 99.9
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1356.3 768 91.8
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1223.0 769 82.1
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1130.9 760 76.4
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1124.8 760 77.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1120.5 760 77.0
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1105.1 763 74.7
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1100.5 766 75.2
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 766 76.0
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1095.9 761 75.3
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1095.1 760 74.5
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1092.8 761 74.4
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1085.9 765 75.2
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1082.0 776 73.2
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1081.6 727 76.8
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1080.5 761 73.9
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 1.5e-311 1072.4 764 74.3
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 9.8e-311 1069.7 783 71.4
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 8.3e-310 1066.6 761 72.7
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 3.8e-307 1057.7 759 72.3
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.5e-306 1055.8 768 72.9
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 3.6e-305 1051.2 770 72.7
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.8e-304 1048.9 769 72.7
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.3e-304 1048.5 790 71.5
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 2.6e-303 1045.0 770 71.6
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 3.4e-303 1044.6 770 71.7
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 7.5e-303 1043.5 767 72.8
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 1.3e-302 1042.7 762 71.1
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 6.4e-302 1040.4 776 71.1
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 1.4e-301 1039.3 760 70.8
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 1.9e-301 1038.9 774 70.7
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 4.1e-301 1037.7 769 70.9
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 4.1e-301 1037.7 765 71.0
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.4e-301 1037.3 809 69.8
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 9.2e-301 1036.6 774 70.5
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 6.0e-300 1033.9 780 70.6
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.3e-299 1032.7 761 70.7
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.5e-298 1029.2 769 70.5
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 5.6e-298 1027.3 763 70.6
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 1.6e-297 1025.8 763 70.5
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.8e-297 1025.0 759 69.8
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 1.1e-296 1023.1 769 70.1
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 2.3e-296 1021.9 788 69.3
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 4.0e-296 1021.1 760 70.1
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 2.6e-295 1018.5 765 70.7
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 1.7e-294 1015.8 765 70.1
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 4.1e-293 1011.1 774 69.3
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 2.3e-288 995.3 764 68.1
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 6.8e-288 993.8 750 68.8
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 8.9e-288 993.4 760 69.1
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 6.4e-286 987.3 767 66.8
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 6.2e-281 970.7 766 67.8
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.4e-280 969.5 755 67.7
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 1.2e-279 966.5 774 66.8
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 1.5e-279 966.1 767 67.5
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 7.8e-276 953.7 750 67.6
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.0e-275 953.4 762 65.9
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.4e-271 938.3 772 66.5
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.0e-267 926.8 773 64.8
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 2.3e-267 925.6 932 56.9
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 3.9e-267 924.9 770 66.4
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.8e-264 916.0 753 63.9
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 3.1e-264 915.2 760 63.7
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 3.1e-264 915.2 761 64.4
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 4.0e-264 914.8 761 63.7
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.2e-263 913.3 772 64.5
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 2.6e-263 912.1 763 65.3
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 4.9e-262 907.9 739 64.7
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 8.4e-262 907.1 761 63.3
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 2.1e-260 902.5 762 62.9
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 2.1e-260 902.5 762 62.9
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 6.0e-260 901.0 765 63.1
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 2.3e-259 899.0 686 70.3
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 3.0e-259 898.7 761 63.1
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 3.9e-259 898.3 759 63.8
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 5.1e-259 897.9 785 61.4
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 9.6e-250 867.1 761 61.4
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 1.1e-248 863.6 730 61.8
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.4e-248 862.4 516 83.7
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 3.1e-248 862.1 516 83.7
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 6.9e-248 860.9 763 61.1
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 2.9e-246 855.5 767 59.8
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 4.2e-245 851.7 763 60.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.6e-244 849.7 644 71.9
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 6.9e-240 834.3 759 60.7
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 5.5e-237 824.7 768 59.8
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.0e-234 816.2 752 60.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 7.4e-234 814.3 686 62.7
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.8e-233 812.4 753 59.5
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.8e-232 809.7 516 78.9
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.4e-229 800.0 754 58.8
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 3.2e-229 798.9 752 59.0
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 9.7e-226 787.3 754 58.1
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 2.0e-207 726.5 629 59.9
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.5e-205 720.3 769 52.7
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 5.2e-203 711.8 822 49.4
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 3.4e-194 682.6 835 46.5
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 5.9e-191 671.8 713 55.4
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 3.1e-187 659.4 759 48.4
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.0e-182 642.1 762 50.5
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.0e-174 617.8 760 48.8
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.9e-173 613.6 752 48.7
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.5e-173 613.2 752 48.4
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-171 607.4 760 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 5.1e-166 589.0 734 46.5
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 2.9e-161 573.2 777 43.6
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.2e-143 514.6 461 62.9
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.0e-137 495.0 334 74.3
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.3e-125 453.0 369 62.6
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.0e-102 376.7 218 82.1
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 4.8e-100 369.8 249 82.3
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 1.1e-99 368.6 249 81.9
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 3.1e-99 367.1 464 49.1
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 2.7e-98 364.0 241 75.5
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 4.4e-85 320.1 375 53.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 2.4e-83 314.3 290 63.1
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.5e-72 277.7 687 30.3
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 6.2e-71 273.1 575 30.6
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.9e-64 251.5 403 36.7
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.6e-61 241.1 220 64.1
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.7e-60 238.4 135 83.0
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 8.3e-60 236.1 182 67.6
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 6.8e-54 216.5 158 67.1
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.2e-50 205.7 189 66.1
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 7.3e-48 196.4 114 79.8
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 4.8e-39 167.2 129 66.7
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 5.8e-37 160.2 172 57.6
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 2.1e-34 151.8 96 76.0
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.9e-25 120.9 147 46.9
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 2.1e-23 115.2 136 56.6
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.8e-22 112.1 121 54.5
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 8.4e-20 103.2 55 81.8
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.7e-18 98.2 66 72.7
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 3.0e-17 94.7 62 71.0
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.1e-16 92.8 140 45.0
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 3.3e-16 91.3 488 21.1
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.6e-10 70.9 405 22.2
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 6.1e-10 70.5 85 48.2
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 7.9e-10 70.1 112 40.2
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 7.9e-10 70.1 112 40.2
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.0e-09 69.7 112 39.3
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 1.3e-09 69.3 363 22.3
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 1.8e-09 68.9 344 23.5
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 5.1e-09 67.4 342 22.2
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 8.7e-09 66.6 112 40.2
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 8.7e-09 66.6 373 21.7
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.1e-08 66.2 89 44.9
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.9e-08 65.5 59 50.8
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 3.3e-08 64.7 330 23.0
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.3e-08 64.7 365 19.7
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 5.7e-08 63.9 337 21.4
Zm00001eb007090 Zea mays HOM05D002279 ORTHO05D002644 9.7e-08 63.2 333 22.5
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 3.7e-07 61.2 90 41.1
Aqoxy3G03882 Aquilegia oxysepala HOM05D001971 ORTHO05D003057 1.8e-06 58.9 176 26.1
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.8e-06 58.9 58 51.7
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 5.3e-06 57.4 39 66.7


User provided reference genes

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