Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17637 Corylus avellana HOM05D000042 ORTHO05D000980 7.9e-49 196.8 102 100.0
Cfa018426 Carpinus fangiana HOM05D000042 ORTHO05D000980 9.4e-34 146.7 116 72.4
Hma1.2p1_1121F.1_g259270 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 6.5e-27 124.0 118 58.5
Ciclev10002471m.g Citrus clementina HOM05D000042 ORTHO05D000980 2.5e-26 122.1 77 75.3
Haze_17636 Corylus avellana HOM05D000042 ORTHO05D000980 2.5e-26 122.1 85 77.6
QL09p032453 Quercus lobata HOM05D000042 ORTHO05D000980 2.5e-26 122.1 76 78.9
QL09p032472 Quercus lobata HOM05D000042 ORTHO05D000980 2.5e-26 122.1 76 78.9
SHI09220 Sapria himalayana HOM05D000042 ORTHO05D000980 2.5e-26 122.1 77 76.6
CsaV3_4G028010 Cucumis sativus L. HOM05D000042 ORTHO05D000980 4.2e-26 121.3 97 63.9
Actinidia21276 Actinidia chinensis HOM05D000042 ORTHO05D000980 5.5e-26 120.9 97 64.9
MELO3C010515.2 Cucumis melo HOM05D000042 ORTHO05D000980 5.5e-26 120.9 97 63.9
Actinidia15212 Actinidia chinensis HOM05D000042 ORTHO05D000980 7.2e-26 120.6 97 63.9
ClCG11G016000 Citrullus lanatus HOM05D000042 ORTHO05D000980 9.5e-26 120.2 95 64.2
CSS0008613 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 1.6e-25 119.4 113 60.2
Haze_17996 Corylus avellana HOM05D000042 ORTHO05D000980 2.1e-25 119.0 109 60.6
Sed0027083 Sechium edule HOM05D000042 ORTHO05D000980 2.1e-25 119.0 98 61.2
FAN15G0410 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.8e-24 115.9 78 71.8
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.8e-24 115.9 78 71.8
Cfa018130 Carpinus fangiana HOM05D000042 ORTHO05D000980 2.3e-24 115.5 95 64.2
CiPaw.15G031300 Carya illinoinensis HOM05D000042 ORTHO05D000980 3.0e-24 115.2 98 63.3
Hma1.2p1_0880F.1_g231800 Hydrangea macrophylla HOM05D000042 ORTHO05D000980 3.0e-24 115.2 118 56.8
CSS0013221 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 6.8e-24 114.0 116 56.0
FAN24G2119 Fragaria x ananassa HOM05D000042 ORTHO05D000980 6.8e-24 114.0 79 70.9
Glyma.04G245500 Glycine max HOM05D000042 ORTHO05D000980 6.8e-24 114.0 97 59.8
Ca_12647_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.2e-23 113.2 97 59.8
Lalb_Chr08g0241081 Lupinus albus HOM05D000042 ORTHO05D000980 1.2e-23 113.2 77 67.5
Dinv14692 Davidia involucrata HOM05D000042 ORTHO05D000980 1.5e-23 112.8 77 68.8
Manes.02G168500 Manihot esculenta HOM05D000042 ORTHO05D000980 1.5e-23 112.8 117 56.4
Lalb_Chr08g0241091 Lupinus albus HOM05D000042 ORTHO05D000980 2.0e-23 112.5 97 58.8
Glyma.06G117600 Glycine max HOM05D000042 ORTHO05D000980 3.4e-23 111.7 97 58.8
CAN.G531.15 Capsicum annuum HOM05D000042 ORTHO05D000980 4.4e-23 111.3 98 56.1
Prupe.1G489400 Prunus persica HOM05D000042 ORTHO05D000980 4.4e-23 111.3 97 55.7
VMungo1309G1360 Vigna mungo HOM05D000042 ORTHO05D000980 4.4e-23 111.3 97 58.8
CAN.G348.10 Capsicum annuum HOM05D000042 ORTHO05D000980 5.7e-23 110.9 76 67.1
Phvul.009G130000 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 5.7e-23 110.9 97 57.7
Solyc08g067230.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 5.7e-23 110.9 76 67.1
Phvul.001G068200 Phaseolus vulgaris HOM05D000042 ORTHO05D000980 7.5e-23 110.5 97 57.7
RcHm_v2.0_Chr6g0296731 Rosa chinensis HOM05D000042 ORTHO05D000980 7.5e-23 110.5 94 59.6
TPR.G28821 Trifolium pratense HOM05D000042 ORTHO05D000980 7.5e-23 110.5 97 57.7
Nitab4.5_0004346g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 9.8e-23 110.2 91 59.3
Ca_16609_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000980 1.3e-22 109.8 97 57.7
Glyma.13G034100 Glycine max HOM05D000042 ORTHO05D000980 1.3e-22 109.8 97 56.7
Sopen08g021160 Solanum pennellii HOM05D000042 ORTHO05D000980 1.3e-22 109.8 76 65.8
TWI60G1129 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 1.3e-22 109.8 98 57.1
Migut.A00326 Erythranthe guttata HOM05D000042 ORTHO05D000980 1.7e-22 109.4 98 57.1
Manes.18G082400 Manihot esculenta HOM05D000042 ORTHO05D000980 1.7e-22 109.4 116 52.6
Oeu020103.1 Olea europaea HOM05D000042 ORTHO05D000980 1.7e-22 109.4 79 65.8
Psat5g084680 Pisum sativum HOM05D000042 ORTHO05D000980 1.7e-22 109.4 97 57.7
Medtr3g088615 Medicago truncatula HOM05D000042 ORTHO05D000980 2.2e-22 109.0 97 57.7
PGR044G1215 Punica granatum HOM05D000042 ORTHO05D000980 2.2e-22 109.0 97 57.7
VMungo0647G2314 Vigna mungo HOM05D000042 ORTHO05D000980 2.2e-22 109.0 97 56.7
FvH4_2g27870 Fragaria vesca HOM05D000042 ORTHO05D000980 2.8e-22 108.6 97 57.7
Gohir.A02G070800 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.8e-22 108.6 77 68.8
Gohir.D02G078000 Gossypium hirsutum HOM05D000042 ORTHO05D000980 2.8e-22 108.6 77 68.8
Gorai.005G087600 Gossypium raimondii HOM05D000042 ORTHO05D000980 2.8e-22 108.6 77 68.8
Sc26g0002920 Simmondsia chinensis HOM05D000042 ORTHO05D000980 2.8e-22 108.6 74 70.3
Solyc06g059970.4 Solanum lycopersicum HOM05D000042 ORTHO05D000980 2.8e-22 108.6 98 54.1
Sopen06g020070 Solanum pennellii HOM05D000042 ORTHO05D000980 2.8e-22 108.6 98 54.1
Thecc.08G133200 Theobroma cacao HOM05D000042 ORTHO05D000980 2.8e-22 108.6 97 57.7
GSVIVG01008806001 Vitis vinifera HOM05D000042 ORTHO05D000980 2.8e-22 108.6 97 54.6
Ciclev10002422m.g Citrus clementina HOM05D000042 ORTHO05D000980 3.7e-22 108.2 83 61.4
Nitab4.5_0000418g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000980 3.7e-22 108.2 98 53.1
Potri.002G079000 Populus trichocarpa HOM05D000042 ORTHO05D000980 3.7e-22 108.2 114 51.8
HanXRQChr02g0045511 Helianthus annuus HOM05D000042 ORTHO05D000980 4.9e-22 107.8 97 57.7
Lalb_Chr08g0241111 Lupinus albus HOM05D000042 ORTHO05D000980 4.9e-22 107.8 97 55.7
Nitab4.5_0005166g0020 Nicotiana tabacum HOM05D000042 ORTHO05D000980 4.9e-22 107.8 98 53.1
MSTRG.25848 Avicennia marina HOM05D000042 ORTHO05D000980 6.3e-22 107.5 98 56.1
Eucgr.E01007 Eucalyptus grandis HOM05D000042 ORTHO05D000980 6.3e-22 107.5 98 54.1
Nitab4.5_0000508g0030 Nicotiana tabacum HOM05D000042 ORTHO05D000980 8.3e-22 107.1 91 58.2
SGA_v2.0_scaffold147G36311 Striga asiatica HOM05D000042 ORTHO05D000980 8.3e-22 107.1 98 54.1
TPR.G30557 Trifolium pratense HOM05D000042 ORTHO05D000980 8.3e-22 107.1 76 65.8
arahy.Tifrunner.gnm1.ann1.QQ4618 Arachis hypogaea HOM05D000042 ORTHO05D000980 1.1e-21 106.7 95 58.9
Lj1g0009507 Lotus japonicus HOM05D000042 ORTHO05D000980 1.1e-21 106.7 97 55.7
Glyma.14G155100 Glycine max HOM05D000042 ORTHO05D000980 1.4e-21 106.3 97 55.7
Gohir.A01G190300 Gossypium hirsutum HOM05D000042 ORTHO05D000980 1.4e-21 106.3 76 68.4
Lsat_1_v5_gn_1_7541 Lactuca sativa HOM05D000042 ORTHO05D000980 1.4e-21 106.3 98 55.1
Nn1g08955 Nelumbo nucifera HOM05D000042 ORTHO05D000980 1.4e-21 106.3 76 68.4
RcHm_v2.0_Chr6g0296721 Rosa chinensis HOM05D000042 ORTHO05D000980 1.4e-21 106.3 96 57.3
PGSC0003DMG401007392 Solanum tuberosum HOM05D000042 ORTHO05D000980 1.4e-21 106.3 76 64.5
Cpa.g.sc26.316 Carica papaya HOM05D000042 ORTHO05D000980 1.8e-21 105.9 116 50.0
HanXRQChr12g0358781 Helianthus annuus HOM05D000042 ORTHO05D000980 1.8e-21 105.9 97 56.7
arahy.Tifrunner.gnm1.ann1.NKL1UU Arachis hypogaea HOM05D000042 ORTHO05D000980 2.4e-21 105.5 97 57.7
arahy.Tifrunner.gnm1.ann1.78PTZY Arachis hypogaea HOM05D000042 ORTHO05D000980 3.1e-21 105.1 97 57.7
Eucgr.E01006 Eucalyptus grandis HOM05D000042 ORTHO05D000980 3.1e-21 105.1 97 55.7
Potri.005G182200 Populus trichocarpa HOM05D000042 ORTHO05D000980 3.1e-21 105.1 114 51.8
vmacro00866 Vaccinium macrocarpon HOM05D000042 ORTHO05D000980 4.1e-21 104.8 80 65.0
HPP92_005663 Vanilla planifolia HOM05D000042 ORTHO05D000980 5.4e-21 104.4 116 48.3
MBI18_g09769_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 7.0e-21 104.0 99 53.5
TWI34G0794 Tripterygium wilfordii HOM05D000042 ORTHO05D000980 9.2e-21 103.6 98 54.1
arahy.Tifrunner.gnm1.ann1.DI51EV Arachis hypogaea HOM05D000042 ORTHO05D000980 1.2e-20 103.2 71 70.4
CSS0022940 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000980 1.2e-20 103.2 101 53.5
Duzib093G1499 Durio zibethinus HOM05D000042 ORTHO05D000980 1.2e-20 103.2 97 56.7
Gohir.D01G179500 Gossypium hirsutum HOM05D000042 ORTHO05D000980 1.2e-20 103.2 70 71.4
Atru.chr13.1570 Acer truncatum HOM05D000042 ORTHO05D000980 2.7e-20 102.1 117 48.7
Aqoxy6G00308 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 2.7e-20 102.1 97 54.6
ECA236G4655 Erigeron canadensis HOM05D000042 ORTHO05D000980 2.7e-20 102.1 97 52.6
EL10Ac1g01348 Beta vulgaris HOM05D000042 ORTHO05D000980 4.5e-20 101.3 77 63.6
Psat6g019080 Pisum sativum HOM05D000042 ORTHO05D000980 5.9e-20 100.9 69 72.5
SalBow4G1774 Salvia bowleyana HOM05D000042 ORTHO05D000980 7.8e-20 100.5 98 55.1
CARHR192590 Cardamine hirsuta HOM05D000042 ORTHO05D000980 1.0e-19 100.1 115 47.0
TAR625G0222 Trochodendron aralioides HOM05D000042 ORTHO05D000980 1.0e-19 100.1 117 47.0
BcaB05g22859 Brassica carinata HOM05D000042 ORTHO05D000980 1.7e-19 99.4 116 46.6
FvH4_2g27860 Fragaria vesca HOM05D000042 ORTHO05D000980 2.3e-19 99.0 85 55.3
AT5G20240 Arabidopsis thaliana HOM05D000042 ORTHO05D000980 2.9e-19 98.6 98 51.0
AUR62013427 Chenopodium quinoa HOM05D000042 ORTHO05D000980 2.9e-19 98.6 78 62.8
BcaB01g04797 Brassica carinata HOM05D000042 ORTHO05D000980 3.8e-19 98.2 77 58.4
Thhalv10014683m.g Eutrema salsugineum HOM05D000042 ORTHO05D000980 3.8e-19 98.2 94 53.2
Medtr1g029670 Medicago truncatula HOM05D000042 ORTHO05D000980 3.8e-19 98.2 97 47.4
Sp6g24170 Schrenkiella parvula HOM05D000042 ORTHO05D000980 5.0e-19 97.8 98 51.0
BolC2t07028H Brassica oleracea HOM05D000042 ORTHO05D000980 6.6e-19 97.4 79 57.0
ECA236G2126 Erigeron canadensis HOM05D000042 ORTHO05D000980 6.6e-19 97.4 94 54.3
TAR628G0493 Trochodendron aralioides HOM05D000042 ORTHO05D000980 6.6e-19 97.4 128 48.4
Zm00001eb349060 Zea mays HOM05D000042 ORTHO05D000980 6.6e-19 97.4 76 63.2
A02p06120 Brassica napus HOM05D000042 ORTHO05D000980 8.6e-19 97.1 78 57.7
A03p09950 Brassica napus HOM05D000042 ORTHO05D000980 8.6e-19 97.1 111 47.7
C03p11520 Brassica napus HOM05D000042 ORTHO05D000980 8.6e-19 97.1 111 47.7
BolC3t13624H Brassica oleracea HOM05D000042 ORTHO05D000980 8.6e-19 97.1 111 47.7
HanXRQChr02g0040221 Helianthus annuus HOM05D000042 ORTHO05D000980 8.6e-19 97.1 97 55.7
Os01g0883100 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 8.6e-19 97.1 116 46.6
PSO528G0018 Papaver somniferum HOM05D000042 ORTHO05D000980 8.6e-19 97.1 92 54.3
BraA10t44045Z Brassica rapa HOM05D000042 ORTHO05D000980 1.1e-18 96.7 78 56.4
Carub.0006s1863 Capsella rubella HOM05D000042 ORTHO05D000980 1.1e-18 96.7 98 50.0
AUR62007716 Chenopodium quinoa HOM05D000042 ORTHO05D000980 1.1e-18 96.7 74 66.2
Zm00001eb145660 Zea mays HOM05D000042 ORTHO05D000980 1.1e-18 96.7 116 45.7
BraA02t05562Z Brassica rapa HOM05D000042 ORTHO05D000980 1.9e-18 95.9 116 45.7
PSO170G2512 Papaver somniferum HOM05D000042 ORTHO05D000980 2.5e-18 95.5 92 53.3
Zm00001eb349070 Zea mays HOM05D000042 ORTHO05D000980 2.5e-18 95.5 77 62.3
MBI03_g39655_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 3.3e-18 95.1 100 50.0
Aa31LG1G14390 Aethionema arabicum HOM05D000042 ORTHO05D000980 4.3e-18 94.7 77 54.5
BcaC03g13745 Brassica carinata HOM05D000042 ORTHO05D000980 4.3e-18 94.7 119 44.5
FAN15G2212 Fragaria x ananassa HOM05D000042 ORTHO05D000980 5.6e-18 94.4 76 60.5
BcaB08g36537 Brassica carinata HOM05D000527 ORTHO05D000559 7.3e-18 94.0 98 48.0
BcaC04g19414 Brassica carinata HOM05D000042 ORTHO05D000980 7.3e-18 94.0 111 45.9
C09p55960 Brassica napus HOM05D000042 ORTHO05D000980 7.3e-18 94.0 111 45.9
BolC9t58465H Brassica oleracea HOM05D000042 ORTHO05D000980 7.3e-18 94.0 111 45.9
Os05g0423400 Oryza sativa ssp. japonica HOM05D000042 ORTHO05D000980 9.5e-18 93.6 116 44.8
TPR.G37973 Trifolium pratense HOM05D000042 ORTHO05D000980 9.5e-18 93.6 98 49.0
FAN20G2638 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.2e-17 93.2 71 62.0
THA.LOC104808253 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 1.6e-17 92.8 97 48.5
FAN27G3359 Fragaria x ananassa HOM05D000042 ORTHO05D000980 2.1e-17 92.4 76 59.2
THA.LOC104815100 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 2.1e-17 92.4 98 46.9
A10p19700 Brassica napus HOM05D000042 ORTHO05D000980 2.8e-17 92.0 111 45.0
Gorai.002G223100 Gossypium raimondii HOM05D000042 ORTHO05D000980 4.7e-17 91.3 104 50.0
MBI03_g31894_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 8.0e-17 90.5 93 50.5
CANSAT64G2469 Cannabis sativa HOM05D000042 ORTHO05D000980 1.0e-16 90.1 98 49.0
Ah.07g196770 Amaranthus hybridus HOM05D000042 ORTHO05D000980 5.2e-16 87.8 69 62.3
Cc10_g13750 Coffea canephora HOM05D000042 ORTHO05D000980 8.9e-16 87.0 90 55.6
CANSAT64G0749 Cannabis sativa HOM05D000042 ORTHO05D000980 1.5e-15 86.3 99 48.5
Peaxi162Scf00922g00026 Petunia axillaris HOM05D000042 ORTHO05D000980 7.5e-15 84.0 78 57.7
FAN20G0851 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.3e-14 83.2 155 36.8
PSO170G3931 Papaver somniferum HOM05D000042 ORTHO05D000980 4.9e-14 81.3 96 46.9
FAN27G1355 Fragaria x ananassa HOM05D000042 ORTHO05D000980 2.4e-13 79.0 56 67.9
PSO528G0247 Papaver somniferum HOM05D000042 ORTHO05D000980 5.4e-13 77.8 96 45.8
ATR1145G055 Amborella trichopoda HOM05D000042 ORTHO05D000980 7.0e-13 77.4 102 39.2
SEGI_03442 Sequoiadendron giganteum HOM05D000042 ORTHO05D000980 9.2e-13 77.0 76 48.7
DCAR_014369 Daucus carota HOM05D000042 ORTHO05D000980 4.6e-12 74.7 95 45.3
AUR62007715 Chenopodium quinoa HOM05D000042 ORTHO05D000980 2.3e-11 72.4 57 66.7
BNapus_Darmor_BZH_scaffold_38p01720 Brassica napus HOM05D000042 ORTHO05D000980 1.1e-10 70.1 58 62.1
Ah.05g169120 Amaranthus hybridus HOM05D000042 ORTHO05D000980 1.8e-08 62.8 42 69.0
TAR624G0996 Trochodendron aralioides HOM05D000042 ORTHO05D000980 1.8e-08 62.8 96 32.3
AUR62013428 Chenopodium quinoa HOM05D000042 ORTHO05D000980 3.1e-08 62.0 59 57.6
Cfa018427 Carpinus fangiana HOM05D000042 ORTHO05D000980 5.2e-08 61.2 97 47.4
TPR.G36394 Trifolium pratense HOM05D000042 ORTHO05D000980 2.0e-07 59.3 89 39.3
FAN24G0105 Fragaria x ananassa HOM05D000042 ORTHO05D000980 1.7e-06 56.2 76 44.7
Aqoxy6G02422 Aquilegia oxysepala HOM05D000042 ORTHO05D000980 2.9e-06 55.5 74 32.4
MBI18_g11462_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000980 4.9e-06 54.7 86 34.9
SEGI_25299 Sequoiadendron giganteum HOM05D000042 ORTHO05D000980 4.9e-06 54.7 87 35.6
Nn6g33854 Nelumbo nucifera HOM05D000042 ORTHO05D000980 6.4e-06 54.3 101 29.7


User provided reference genes

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