Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 1.0e-199 699.9 369 100.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 5.8e-142 508.1 298 90.9
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 1.1e-135 487.3 366 76.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-116 421.4 376 65.2
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.3e-112 410.6 366 64.2
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.4e-111 407.1 366 65.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.8e-111 406.8 379 63.3
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.9e-109 399.4 370 61.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.8e-109 399.1 368 64.9
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 3.8e-109 399.1 279 77.4
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 8.5e-109 397.9 286 75.2
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.1e-108 397.5 370 60.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.4e-108 397.1 358 64.8
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.9e-108 396.7 378 61.6
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.2e-108 396.0 380 62.4
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 4.2e-108 395.6 276 74.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 5.5e-108 395.2 371 62.8
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 2.7e-107 392.9 358 63.1
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 6.1e-107 391.7 277 74.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 8.0e-107 391.3 280 74.6
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 8.0e-107 391.3 368 61.1
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-106 391.0 364 63.5
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.4e-106 390.6 369 60.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.8e-106 390.2 365 62.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 3.0e-106 389.4 278 73.7
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.9e-106 389.0 382 60.5
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 5.2e-106 388.7 346 61.8
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.1e-105 387.5 360 61.4
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.5e-105 387.1 281 73.3
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.5e-105 387.1 281 73.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 2.0e-105 386.7 381 60.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-105 386.3 358 62.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.3e-105 386.0 280 72.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 5.7e-105 385.2 382 60.7
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 5.7e-105 385.2 368 59.8
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 5.7e-105 385.2 284 72.2
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 5.7e-105 385.2 276 73.2
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 7.4e-105 384.8 367 61.3
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 9.7e-105 384.4 318 66.7
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.3e-104 384.0 284 72.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-104 383.6 277 72.2
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.2e-104 383.3 362 61.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.8e-104 382.9 277 72.6
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 2.8e-104 382.9 318 68.6
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.8e-104 382.9 358 62.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.2e-104 381.3 364 59.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 8.2e-104 381.3 276 71.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.1e-103 380.9 377 61.0
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.4e-103 380.6 390 58.7
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 2.4e-103 379.8 366 59.6
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 4.1e-103 379.0 368 61.7
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 7.0e-103 378.3 277 72.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 9.1e-103 377.9 280 71.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 1.2e-102 377.5 276 71.7
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.0e-102 376.7 276 72.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.0e-102 376.7 366 60.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 3.5e-102 375.9 352 61.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 8.5e-101 371.3 313 64.9
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-100 370.5 354 60.5
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 9.4e-100 367.9 356 60.1
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 9.4e-100 367.9 355 58.3
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.2e-99 367.5 381 60.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.6e-99 367.1 344 60.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.7e-99 366.3 287 69.7
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 6.1e-99 365.2 271 70.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.0e-98 364.4 283 67.5
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.8e-98 363.6 336 61.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.3e-98 363.2 339 61.4
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 5.2e-98 362.1 358 59.2
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.5e-97 360.5 300 65.3
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.0e-97 360.1 307 64.8
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.4e-97 359.0 333 60.7
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.3e-96 357.5 276 68.5
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.7e-96 357.1 347 59.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.8e-96 356.3 416 53.4
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 3.7e-96 355.9 313 63.3
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.3e-96 355.1 289 65.4
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.1e-95 354.4 338 60.7
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 4.1e-95 352.4 344 58.7
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 7.0e-95 351.7 284 65.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.0e-94 350.1 367 56.7
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.5e-94 349.4 279 65.9
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.2e-93 346.7 367 56.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.8e-93 345.9 354 56.2
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 5.0e-93 345.5 359 56.8
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 5.0e-93 345.5 359 56.8
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.9e-92 343.6 386 55.7
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.2e-92 342.8 336 57.4
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 7.2e-92 341.7 319 60.8
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.7e-91 339.7 304 60.2
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 8.0e-91 338.2 331 58.3
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.0e-90 335.9 342 56.1
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 3.1e-87 326.2 276 63.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.6e-86 323.9 276 62.3
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 7.7e-86 321.6 275 62.2
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.3e-85 320.9 280 61.4
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.3e-85 320.9 275 62.2
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 1.3e-80 304.3 300 58.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 9.5e-76 288.1 270 62.2
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 2.3e-74 283.5 276 58.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 8.3e-72 275.0 352 48.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.0e-69 265.8 312 51.6
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 8.0e-67 258.5 274 48.5
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.2e-66 255.8 169 79.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.0e-65 253.8 352 43.5
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 4.9e-64 249.2 364 42.6
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.4e-56 222.2 191 67.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 2.4e-55 220.3 267 46.4
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.5e-54 216.5 167 67.7
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-52 211.1 208 61.5
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.7e-48 197.6 307 40.7
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 5.4e-47 192.6 190 60.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.0e-45 188.3 207 54.6
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.3e-42 176.0 147 64.6
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 5.8e-41 172.6 111 79.3
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 5.8e-41 172.6 163 60.1
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-39 168.3 180 59.4
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 5.4e-39 166.0 121 70.2
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 7.8e-38 162.2 184 54.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.4e-33 146.7 111 71.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.4e-33 146.7 96 78.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 7.1e-31 139.0 129 58.1
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.5e-28 131.3 145 52.4
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.0e-25 120.9 79 72.2
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 5.8e-25 119.4 119 56.3
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.3e-24 118.2 100 65.0
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 3.2e-23 113.6 82 68.3
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 5.5e-23 112.8 85 68.2
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 9.3e-23 112.1 166 46.4
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 5.7e-20 102.8 83 67.5
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.1e-18 98.6 135 44.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 2.6e-17 94.0 50 90.0
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.0e-16 92.0 276 28.3
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.3e-16 91.7 107 55.1
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 5.0e-16 89.7 56 80.4
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.2e-15 86.7 96 56.2
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 6.7e-13 79.3 295 29.2
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.5e-12 77.4 81 56.8
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.7e-11 73.6 64 60.9
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-10 72.0 209 29.2
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.1e-10 70.1 152 32.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 6.9e-10 69.3 138 38.4
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.5e-09 66.6 77 53.2
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 4.5e-09 66.6 39 76.9
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.7e-09 65.9 189 32.3


User provided reference genes

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