Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16968 Corylus avellana HOM05D005234 ORTHO05D006583 1.4e-226 789.3 399 100.0
Cfa001561 Carpinus fangiana HOM05D005234 ORTHO05D006583 7.6e-196 687.2 482 77.4
QL08p057492 Quercus lobata HOM05D005234 ORTHO05D006583 1.4e-157 560.1 483 63.8
CiPaw.01G279400 Carya illinoinensis HOM05D005234 ORTHO05D006583 1.0e-147 527.3 464 63.8
GSVIVG01032632001 Vitis vinifera HOM05D005234 ORTHO05D006583 8.3e-126 454.5 435 57.9
COL.COLO4_05802 Corchorus olitorius HOM05D005234 ORTHO05D006583 8.9e-120 434.5 443 54.2
Gorai.012G067000 Gossypium raimondii HOM05D005234 ORTHO05D006583 8.9e-120 434.5 420 56.2
RcHm_v2.0_Chr1g0364981 Rosa chinensis HOM05D005234 ORTHO05D006583 1.5e-119 433.7 458 52.0
Gohir.A05G352700 Gossypium hirsutum HOM05D005234 ORTHO05D006583 5.9e-116 421.8 453 51.9
Gohir.D04G060251 Gossypium hirsutum HOM05D005234 ORTHO05D006583 1.0e-115 421.0 447 52.3
Actinidia38226 Actinidia chinensis HOM05D005234 ORTHO05D006583 2.9e-115 419.5 464 53.4
Sabra08G0033600 Salix brachista HOM05D005234 ORTHO05D006583 5.6e-114 415.2 476 50.2
VMungo0720G1519 Vigna mungo HOM05D005234 ORTHO05D006583 1.2e-113 414.1 410 54.9
Lalb_Chr06g0164091 Lupinus albus HOM05D005234 ORTHO05D006583 2.8e-113 412.9 407 56.0
TWI63G0851 Tripterygium wilfordii HOM05D005234 ORTHO05D006583 2.3e-112 409.8 426 52.1
CSS0032920 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 5.2e-112 408.7 350 61.7
CSS0021401 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D004861 8.9e-112 407.9 352 61.6
Dinv31388 Davidia involucrata HOM05D005234 ORTHO05D006583 1.2e-111 407.5 444 53.2
MD01G1116500 Malus domestica HOM05D005234 ORTHO05D006583 4.4e-111 405.6 459 51.2
Nn2g10556 Nelumbo nucifera HOM05D005234 ORTHO05D006583 4.4e-111 405.6 415 52.5
Glyma.10G292500 Glycine max HOM05D005234 ORTHO05D006583 2.2e-110 403.3 428 53.7
Cpa.g.sc1.299 Carica papaya HOM05D005234 ORTHO05D006583 2.9e-110 402.9 386 55.2
Duzib114G0593 Durio zibethinus HOM05D005234 ORTHO05D006583 4.9e-110 402.1 416 54.6
Potri.008G047400 Populus trichocarpa HOM05D005234 ORTHO05D006583 4.9e-110 402.1 442 52.0
ClCG09G020200 Citrullus lanatus HOM05D005234 ORTHO05D006583 1.0e-107 394.4 406 53.4
Medtr1g115980 Medicago truncatula HOM05D005234 ORTHO05D006583 1.3e-107 394.0 410 53.4
Cc02_g08680 Coffea canephora HOM05D005234 ORTHO05D006583 2.3e-107 393.3 409 53.1
Phvul.007G007800 Phaseolus vulgaris HOM05D005234 ORTHO05D006583 3.0e-107 392.9 444 50.5
TPR.G10401 Trifolium pratense HOM05D005234 ORTHO05D006583 1.9e-106 390.2 411 53.3
AL5G36200 Arabidopsis lyrata HOM05D005234 ORTHO05D006583 4.3e-106 389.0 409 50.4
Sed0019162 Sechium edule HOM05D005234 ORTHO05D006583 4.3e-106 389.0 409 52.1
Carub.0005s2171 Capsella rubella HOM05D005234 ORTHO05D006583 3.6e-105 386.0 407 51.1
CsaV3_5G026250 Cucumis sativus L. HOM05D005234 ORTHO05D006583 6.8e-104 381.7 409 51.8
Sp5g07340 Schrenkiella parvula HOM05D005234 ORTHO05D006583 2.6e-103 379.8 450 46.7
AT3G55080 Arabidopsis thaliana HOM05D005234 ORTHO05D006583 3.4e-103 379.4 409 50.1
BcaB01g00128 Brassica carinata HOM05D005234 ORTHO05D006583 1.3e-102 377.5 413 48.4
MELO3C025470.2 Cucumis melo HOM05D005234 ORTHO05D006583 6.4e-102 375.2 412 51.0
THA.LOC104809996 Tarenaya hassleriana HOM05D005234 ORTHO05D006583 2.4e-101 373.2 409 49.6
PSO063G5764 Papaver somniferum HOM05D005234 ORTHO05D006583 7.1e-101 371.7 415 48.4
HanXRQChr14g0460751 Helianthus annuus HOM05D005234 ORTHO05D006583 1.6e-100 370.5 409 49.6
Thhalv10010346m.g Eutrema salsugineum HOM05D005234 ORTHO05D006583 2.7e-100 369.8 410 48.3
PGR044G0090 Punica granatum HOM05D005234 ORTHO05D006583 2.7e-100 369.8 466 47.9
Lsat_1_v5_gn_2_115220 Lactuca sativa HOM05D005234 ORTHO05D006583 1.0e-99 367.9 413 49.4
EL10Ac2g03507 Beta vulgaris HOM05D005234 ORTHO05D006583 1.1e-98 364.4 428 49.1
FAN01G2148 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.5e-98 364.0 479 44.1
FAN01G2697 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.5e-98 364.0 479 44.1
ECA238G2043 Erigeron canadensis HOM05D005234 ORTHO05D006583 9.5e-98 361.3 408 47.8
Eucgr.J01148 Eucalyptus grandis HOM05D005234 ORTHO05D006583 1.2e-97 360.9 410 49.3
Hund06032 Selenicereus undatus HOM05D005234 ORTHO05D006583 1.1e-96 357.8 397 48.9
Aa31LG10G10060 Aethionema arabicum HOM05D005234 ORTHO05D006583 1.8e-96 357.1 413 46.5
C08p30350 Brassica napus HOM05D005234 ORTHO05D006583 3.1e-96 356.3 414 47.1
Migut.A00396 Erythranthe guttata HOM05D005234 ORTHO05D006583 4.0e-96 355.9 410 46.8
SalBow4G2780 Salvia bowleyana HOM05D005234 ORTHO05D006583 4.0e-96 355.9 404 46.8
BcaC07g39833 Brassica carinata HOM05D005234 ORTHO05D006583 5.2e-96 355.5 414 47.1
A09p48110 Brassica napus HOM05D005234 ORTHO05D006583 2.0e-95 353.6 414 47.1
BolC8t50657H Brassica oleracea HOM05D005234 ORTHO05D006583 3.4e-95 352.8 414 47.3
arahy.Tifrunner.gnm1.ann1.IBY72V Arachis hypogaea HOM05D005234 ORTHO05D006583 5.8e-95 352.1 426 49.8
CANSAT56G3438 Cannabis sativa HOM05D005234 ORTHO05D006583 4.9e-94 349.0 411 48.2
FAN06G4140 Fragaria x ananassa HOM05D005234 ORTHO05D006583 8.4e-94 348.2 388 50.0
arahy.Tifrunner.gnm1.ann1.E1ZVHS Arachis hypogaea HOM05D005234 ORTHO05D006583 3.5e-92 342.8 447 47.2
CDE04G1829 Ceratophyllum demersum HOM05D005234 ORTHO05D006583 3.5e-92 342.8 394 46.4
BraA09t40265Z Brassica rapa HOM05D005234 ORTHO05D006583 3.9e-91 339.3 437 44.4
SGA_v2.0_scaffold193G40685 Striga asiatica HOM05D005234 ORTHO05D006583 2.8e-89 333.2 414 44.4
FAN06G4823 Fragaria x ananassa HOM05D005234 ORTHO05D006583 1.5e-87 327.4 436 44.3
Nitab4.5_0000271g0220 Nicotiana tabacum HOM05D005234 ORTHO05D006583 4.4e-87 325.9 386 47.2
Ca_11325_v3 Cicer arietinum L. HOM05D005234 ORTHO05D006583 5.4e-85 318.9 331 54.7
HPP92_021203 Vanilla planifolia HOM05D005234 ORTHO05D006583 3.5e-84 316.2 408 43.9
AUR62025541 Chenopodium quinoa HOM05D005234 ORTHO05D006583 4.0e-80 302.8 444 43.9
Peaxi162Scf00629g00122 Petunia axillaris HOM05D005234 ORTHO05D006583 2.6e-79 300.1 390 45.1
Manes.07G106500 Manihot esculenta HOM05D005234 ORTHO05D006583 5.8e-79 298.9 314 51.9
unitig_26.g8857 Utricularia gibba HOM05D005234 ORTHO05D006583 1.6e-76 290.8 407 41.3
AUR62042662 Chenopodium quinoa HOM05D005234 ORTHO05D006583 1.3e-75 287.7 341 47.8
Thecc.10G063300 Theobroma cacao HOM05D005234 ORTHO05D006583 1.1e-72 278.1 320 50.3
A09p32550 Brassica napus HOM05D005234 ORTHO05D006583 6.9e-72 275.4 419 41.1
FvH4_7g20720 Fragaria vesca HOM05D005234 ORTHO05D006583 1.1e-69 268.1 284 51.1
CARHR165100 Cardamine hirsuta HOM05D005234 ORTHO05D006583 6.0e-68 262.3 236 55.9
Ciclev10032643m.g Citrus clementina HOM05D005234 ORTHO05D006583 3.0e-67 260.0 201 64.7
TAR623G0173 Trochodendron aralioides HOM05D005234 ORTHO05D006583 5.1e-67 259.2 286 51.7
BolC8t50648H Brassica oleracea HOM05D005234 ORTHO05D006583 4.8e-65 252.7 340 43.8
Mapoly0068s0008 Marchantia polymorpha HOM05D005234 ORTHO05D006583 2.4e-64 250.4 403 36.0
BcaC07g39828 Brassica carinata HOM05D005234 ORTHO05D006583 1.2e-63 248.1 357 43.1
Prupe.2G224300 Prunus persica HOM05D005234 ORTHO05D006583 3.8e-62 243.0 239 54.8
Pp3c3_27330 Physcomitrium patens HOM05D005234 ORTHO05D006583 2.5e-61 240.4 399 35.8
Aqoxy4G03097 Aquilegia oxysepala HOM05D005234 ORTHO05D006583 7.9e-60 235.3 311 44.1
BolC8t50645H Brassica oleracea HOM05D005234 ORTHO05D006583 3.9e-59 233.0 317 42.0
BolC8t50642H Brassica oleracea HOM05D005234 ORTHO05D006583 1.5e-58 231.1 316 41.8
Os01g0976450 Oryza sativa ssp. japonica HOM05D005234 ORTHO05D006583 1.5e-58 231.1 391 36.6
SMO141G0013 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 7.4e-58 228.8 391 36.6
Psat6g238640 Pisum sativum HOM05D005234 ORTHO05D006583 7.2e-53 212.2 251 47.4
SEGI_06338 Sequoiadendron giganteum HOM05D005234 ORTHO05D006583 1.6e-52 211.1 212 53.3
BraA09t38797Z Brassica rapa HOM05D005234 ORTHO05D006583 3.7e-49 199.9 245 47.3
Pp3c19_10210 Physcomitrium patens HOM05D005234 ORTHO05D006583 9.0e-48 195.3 397 32.0
Hma1.2p1_0348F.1_g131710 Hydrangea macrophylla HOM05D005234 ORTHO05D006583 5.9e-47 192.6 148 68.2
Atru.chr12.596 Acer truncatum HOM05D005234 ORTHO05D006583 1.0e-46 191.8 230 47.8
Sc09g0006880 Simmondsia chinensis HOM05D005234 ORTHO05D006583 1.4e-45 188.0 144 63.2
vmacro07108 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 1.2e-44 184.9 136 66.9
Lj8A92T86 Lonicera japonica HOM05D005234 ORTHO05D006583 7.9e-44 182.2 167 58.7
Sc09g0006860 Simmondsia chinensis HOM05D005234 ORTHO05D006583 1.4e-43 181.4 135 63.7
MD00G1163800 Malus domestica HOM05D005234 ORTHO05D006583 2.3e-43 180.6 177 57.6
Sopen06g012740 Solanum pennellii HOM05D005234 ORTHO05D006583 2.5e-42 177.2 173 53.2
FAN03G0311 Fragaria x ananassa HOM05D002912 ORTHO05D003191 3.3e-42 176.8 200 49.0
SMO340G0223 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 3.3e-42 176.8 369 33.6
Oeu025610.1 Olea europaea HOM05D005234 ORTHO05D006583 4.1e-40 169.9 134 60.4
SMO180G0001 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.2e-38 164.1 411 30.7
Solyc06g036700.3 Solanum lycopersicum HOM05D005234 ORTHO05D006583 2.3e-35 154.1 134 57.5
Sopen06g012760 Solanum pennellii HOM05D005234 ORTHO05D006583 3.0e-35 153.7 134 57.5
SMO367G0191 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.1e-34 151.8 373 26.8
SMO348G0083 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 2.6e-34 150.6 392 28.1
ATR0827G035 Amborella trichopoda HOM05D005234 ORTHO05D006583 5.7e-34 149.4 156 51.3
Solyc06g036670.2 Solanum lycopersicum HOM05D005234 ORTHO05D006583 2.6e-31 140.6 137 52.6
Ah.16g107860 Amaranthus hybridus HOM05D005234 ORTHO05D006583 3.5e-31 140.2 100 66.0
MD01G1116800 Malus domestica HOM05D005234 ORTHO05D006583 3.5e-31 140.2 172 48.3
MD01G1117100 Malus domestica HOM05D005234 ORTHO05D006583 1.3e-30 138.3 213 42.7
SEGI_20375 Sequoiadendron giganteum HOM05D005234 ORTHO05D006583 2.2e-30 137.5 137 46.0
Atru.chr12.595 Acer truncatum HOM05D005234 ORTHO05D006583 2.9e-30 137.1 140 55.0
Aqoxy4G03096 Aquilegia oxysepala HOM05D005234 ORTHO05D006583 1.5e-29 134.8 98 65.3
SMO367G1161 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 8.0e-28 129.0 315 27.3
Nitab4.5_0006265g0070 Nicotiana tabacum HOM05D005234 ORTHO05D006583 2.3e-27 127.5 325 32.3
FAN10G0581 Fragaria x ananassa HOM05D005234 ORTHO05D006583 2.0e-26 124.4 97 63.9
Hma1.2p1_0348F.1_g131700 Hydrangea macrophylla HOM05D005234 ORTHO05D006583 7.2e-21 105.9 66 72.7
vmacro07107 Vaccinium macrocarpon HOM05D005234 ORTHO05D006583 3.4e-18 97.1 192 36.5
SMO367G0389 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.7e-17 94.7 241 27.4
BolC8t50639H Brassica oleracea HOM05D005234 ORTHO05D006583 3.8e-14 83.6 150 33.3
MD01G1116400 Malus domestica HOM05D005234 ORTHO05D006583 8.5e-14 82.4 66 62.1
arahy.Tifrunner.gnm1.ann1.IYSU3D Arachis hypogaea HOM05D005234 ORTHO05D006583 1.2e-12 78.6 96 47.9
Ciclev10023738m.g Citrus clementina HOM05D005234 ORTHO05D006583 4.7e-12 76.6 50 64.0
Ciclev10006223m.g Citrus clementina HOM05D005234 ORTHO05D006583 3.0e-11 73.9 48 64.6
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 2.0e-10 71.2 395 23.8
MD01G1116200 Malus domestica HOM05D005234 ORTHO05D006583 1.3e-09 68.6 43 74.4
Mapoly0004s0119 Marchantia polymorpha HOM05D034728 ORTHO05D006583 2.2e-09 67.8 95 38.9
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 1.1e-08 65.5 392 22.4
SMO367G1158 Selaginella moellendorffii HOM05D005234 ORTHO05D006583 1.1e-08 65.5 209 24.4
Mapoly0004s0106 Marchantia polymorpha HOM05D034728 ORTHO05D006583 1.8e-08 64.7 95 37.9
MD01G1115300 Malus domestica HOM05D005234 ORTHO05D006583 4.1e-08 63.5 77 49.4
Nn3g16535 Nelumbo nucifera HOM05D005656 ORTHO05D007094 7.7e-07 59.3 232 22.4
Pp3c4_19510 Physcomitrium patens HOM05D004224 ORTHO05D006437 1.7e-06 58.2 162 28.4
unitig_748.g8447 Utricularia gibba HOM05D001485 ORTHO05D001384 2.9e-06 57.4 197 25.4
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 8.6e-06 55.8 200 27.0


User provided reference genes

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