Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 5.1e-145 517.7 257 100.0
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 2.4e-142 508.8 257 98.4
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 4.5e-133 478.0 257 92.6
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 9.7e-120 433.7 257 82.9
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 2.7e-117 425.6 260 82.7
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 1.8e-97 359.8 262 67.2
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 2.9e-95 352.4 262 67.2
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 6.4e-95 351.3 262 66.0
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 1.7e-92 343.2 262 63.4
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.7e-92 343.2 258 67.4
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 3.0e-92 342.4 258 65.5
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 8.6e-92 340.9 258 65.1
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.5e-91 340.1 262 65.6
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.3e-91 338.6 258 67.4
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.4
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.4
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.3e-91 337.8 258 67.4
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 1.6e-90 336.7 258 64.7
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.7e-90 335.1 258 66.7
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.0e-90 334.3 258 67.1
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.0e-90 334.3 258 67.1
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 5.2e-89 331.6 257 61.9
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.6e-88 329.3 260 65.0
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 4.4e-88 328.6 261 64.0
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 4.4e-88 328.6 256 63.7
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 2.9e-87 325.9 262 62.6
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 6.4e-87 324.7 256 62.9
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 1.9e-86 323.2 263 61.2
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 3.2e-86 322.4 261 62.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.4e-86 321.6 256 62.1
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 5.4e-86 321.6 263 61.6
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 9.2e-86 320.9 261 63.2
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 1.6e-85 320.1 263 62.0
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 3.5e-85 318.9 263 61.2
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 4.6e-85 318.5 257 61.9
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.0e-84 317.4 260 63.1
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 3.9e-84 315.5 263 61.6
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 7.3e-83 311.2 253 62.5
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 1.2e-82 310.5 255 61.2
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 1.2e-82 310.5 265 60.4
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 1.6e-82 310.1 263 61.6
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 2.8e-82 309.3 263 61.2
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 2.8e-82 309.3 263 59.3
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 1.1e-81 307.4 259 61.4
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 5.2e-81 305.1 263 59.3
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 5.2e-81 305.1 265 60.8
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 1.5e-80 303.5 264 59.1
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 1.5e-80 303.5 265 59.6
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 4.4e-80 302.0 264 58.7
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 1.3e-79 300.4 252 60.3
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 1.3e-79 300.4 260 57.7
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 1.3e-79 300.4 220 70.0
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 6.4e-79 298.1 261 56.3
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 1.1e-78 297.4 260 58.5
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.9e-78 296.6 261 56.7
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 5.4e-78 295.0 254 60.2
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 5.4e-78 295.0 258 58.9
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 5.4e-78 295.0 258 56.6
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 7.1e-78 294.7 256 59.4
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 7.1e-78 294.7 256 59.4
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 7.1e-78 294.7 256 59.4
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.2e-77 293.9 265 57.7
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 2.1e-77 293.1 264 59.5
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 2.7e-77 292.7 263 55.9
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 3.5e-77 292.4 266 57.1
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 4.6e-77 292.0 258 55.4
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 6.0e-77 291.6 261 56.7
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 7.8e-77 291.2 264 57.6
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 1.0e-76 290.8 258 60.9
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 1.3e-76 290.4 260 58.1
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 3.9e-76 288.9 260 55.8
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 6.6e-76 288.1 262 56.5
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 8.6e-76 287.7 261 54.8
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 8.6e-76 287.7 261 55.2
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 1.1e-75 287.3 259 56.8
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 1.1e-75 287.3 265 57.0
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 1.5e-75 287.0 265 56.6
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 2.5e-75 286.2 262 56.9
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 4.3e-75 285.4 215 67.9
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 7.3e-75 284.6 261 54.4
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 2.1e-74 283.1 272 53.3
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 3.6e-74 282.3 253 56.5
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 3.6e-74 282.3 262 55.0
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 6.8e-73 278.1 224 62.1
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 3.4e-72 275.8 256 53.9
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 2.2e-71 273.1 225 63.1
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 3.9e-68 262.3 317 46.4
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 3.3e-67 259.2 230 57.8
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 2.1e-66 256.5 267 52.4
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.6e-66 255.8 269 51.7
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 1.4e-62 243.8 225 58.2
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 6.0e-61 238.4 264 50.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 7.8e-61 238.0 254 48.8
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 1.3e-60 237.3 226 53.5
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 2.8e-58 229.6 257 49.4
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.4e-57 227.3 242 50.0
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 1.5e-56 223.8 230 52.6
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 5.8e-56 221.9 164 64.6
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 1.7e-55 220.3 165 65.5
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 8.4e-55 218.0 257 47.9
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 4.8e-50 202.2 186 54.3
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 3.4e-48 196.1 151 64.2
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 7.4e-43 178.3 157 54.1
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 7.4e-43 178.3 157 54.1
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 7.4e-43 178.3 157 54.1
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 4.8e-42 175.6 150 54.7
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 6.2e-42 175.3 147 55.1
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 4.2e-38 162.5 251 40.2
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.5e-35 154.1 153 52.9
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 9.7e-35 151.4 112 62.5
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 2.1e-34 150.2 124 54.8
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 4.1e-33 146.0 163 49.1
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 6.9e-33 145.2 260 34.2
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 3.4e-32 142.9 112 62.5
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 1.6e-29 134.0 201 39.3
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 6.1e-29 132.1 280 31.8
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 1.5e-27 127.5 103 60.2
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 1.4e-25 120.9 156 48.7
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 9.1e-25 118.2 103 56.3
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 1.6e-21 107.5 80 66.2
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.4e-20 104.4 79 64.6
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 9.7e-19 98.2 167 37.1
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 1.7e-18 97.4 95 49.5
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 2.8e-18 96.7 103 46.6
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 5.3e-17 92.4 76 59.2
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 5.9e-16 89.0 184 35.9
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 7.9e-13 78.6 48 77.1
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 9.7e-11 71.6 65 49.2
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 2.8e-10 70.1 95 41.1
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 1.3e-07 61.2 67 56.7


User provided reference genes

Program Settings