Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16916 Corylus avellana HOM05D003156 ORTHO05D003508 0.0e+00 1105.5 544 100.0
Cfa001606 Carpinus fangiana HOM05D003156 ORTHO05D003508 3.2e-181 639.0 340 94.1
QL08p056552 Quercus lobata HOM05D003156 ORTHO05D003508 8.9e-155 551.2 341 83.3
CiPaw.02G175200 Carya illinoinensis HOM05D003156 ORTHO05D003508 1.8e-147 526.9 340 78.8
CiPaw.01G274600 Carya illinoinensis HOM05D003156 ORTHO05D003508 2.3e-142 510.0 340 77.1
Prupe.2G215600 Prunus persica HOM05D003156 ORTHO05D003508 3.3e-141 506.1 342 75.4
Thecc.10G070400 Theobroma cacao HOM05D003156 ORTHO05D003508 3.7e-137 492.7 354 74.6
Lj5g0023323 Lotus japonicus HOM05D003156 ORTHO05D003508 1.6e-135 487.3 345 75.4
Ca_10580_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 1.7e-134 483.8 342 73.4
MD07G1176800 Malus domestica HOM05D003156 ORTHO05D003508 5.6e-133 478.8 343 72.0
Glyma.20G178500 Glycine max HOM05D003156 ORTHO05D003508 7.3e-133 478.4 344 73.3
Dinv11794 Davidia involucrata HOM05D003156 ORTHO05D003508 1.2e-132 477.6 345 73.6
Glyma.10G212600 Glycine max HOM05D003156 ORTHO05D003508 3.6e-132 476.1 344 73.0
Medtr1g095570 Medicago truncatula HOM05D003156 ORTHO05D003508 1.1e-131 474.6 344 72.1
VMungo0720G1431 Vigna mungo HOM05D003156 ORTHO05D003508 1.1e-131 474.6 343 72.3
COL.COLO4_23712 Corchorus olitorius HOM05D003156 ORTHO05D003508 5.8e-130 468.8 353 72.0
MD01G1110800 Malus domestica HOM05D003156 ORTHO05D003508 9.9e-130 468.0 343 71.1
arahy.Tifrunner.gnm1.ann1.0MFP8V Arachis hypogaea HOM05D003156 ORTHO05D003508 1.3e-129 467.6 344 70.9
arahy.Tifrunner.gnm1.ann1.PUBH8J Arachis hypogaea HOM05D003156 ORTHO05D003508 1.3e-129 467.6 344 70.9
Phvul.007G093100 Phaseolus vulgaris HOM05D003156 ORTHO05D003508 2.9e-129 466.5 343 71.4
TWI15G0830 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 1.1e-128 464.5 345 72.2
TPR.G1826 Trifolium pratense HOM05D003156 ORTHO05D003508 2.4e-128 463.4 374 66.8
Cpa.g.sc53.53 Carica papaya HOM05D003156 ORTHO05D003508 1.6e-127 460.7 350 70.9
Gohir.A13G024600 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.7e-126 457.2 354 70.3
Psat6g185160 Pisum sativum HOM05D003156 ORTHO05D003508 1.7e-126 457.2 343 71.1
RcHm_v2.0_Chr1g0363841 Rosa chinensis HOM05D003156 ORTHO05D003508 3.0e-126 456.4 343 69.1
CSS0022533 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 2.5e-125 453.4 343 69.4
Atru.chr12.725 Acer truncatum HOM05D003156 ORTHO05D003508 4.3e-125 452.6 361 69.0
Gohir.A10G207200 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.6e-124 450.7 354 69.5
CSS0028910 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 3.6e-124 449.5 343 68.8
GSVIVG01016309001 Vitis vinifera HOM05D003156 ORTHO05D003508 3.6e-124 449.5 331 72.8
Gorai.013G026300 Gossypium raimondii HOM05D003156 ORTHO05D003508 6.2e-124 448.7 354 69.2
Lalb_Chr03g0035991 Lupinus albus HOM05D003156 ORTHO05D003508 1.1e-123 448.0 344 68.3
Gohir.D13G023500 Gossypium hirsutum HOM05D003156 ORTHO05D003508 1.4e-123 447.6 354 69.2
TWI38G2393 Tripterygium wilfordii HOM05D003156 ORTHO05D003508 1.4e-123 447.6 347 69.5
FvH4_7g19850 Fragaria vesca HOM05D003156 ORTHO05D003508 5.2e-123 445.7 344 67.4
Gorai.011G240800 Gossypium raimondii HOM05D003156 ORTHO05D003508 6.8e-123 445.3 354 68.6
Potri.010G220000 Populus trichocarpa HOM05D003156 ORTHO05D003508 5.8e-122 442.2 358 69.0
FAN06G3106 Fragaria x ananassa HOM05D003156 ORTHO05D003508 7.6e-122 441.8 344 67.2
CANSAT56G0537 Cannabis sativa HOM05D003156 ORTHO05D003508 1.7e-121 440.7 369 64.0
Lj1C919T3 Lonicera japonica HOM05D003156 ORTHO05D003508 4.9e-121 439.1 344 69.2
FAN03G0982 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.1e-120 438.0 344 66.3
PGR142G2490 Punica granatum HOM05D003156 ORTHO05D003508 1.4e-120 437.6 349 69.3
FAN10G3307 Fragaria x ananassa HOM05D003156 ORTHO05D003508 1.9e-120 437.2 344 66.3
Potri.008G041900 Populus trichocarpa HOM05D003156 ORTHO05D003508 3.2e-120 436.4 356 68.8
FAN01G2311 Fragaria x ananassa HOM05D003156 ORTHO05D003508 5.4e-120 435.6 344 65.7
Lalb_Chr19g0129611 Lupinus albus HOM05D003156 ORTHO05D003508 2.7e-119 433.3 343 66.2
Lalb_Chr01g0010131 Lupinus albus HOM05D003156 ORTHO05D003508 4.6e-119 432.6 343 67.3
Sabra10G0169800 Salix brachista HOM05D003156 ORTHO05D003508 1.3e-118 431.0 358 67.0
Duzib114G0389 Durio zibethinus HOM05D003156 ORTHO05D003508 4.3e-117 426.0 354 67.8
Ciclev10030482m.g Citrus clementina HOM05D003156 ORTHO05D003508 2.1e-116 423.7 363 65.8
Sabra08G0028800 Salix brachista HOM05D003156 ORTHO05D003508 6.2e-116 422.2 356 66.6
CSS0000465 Camellia sinensis var. sinensis HOM05D003156 ORTHO05D003508 1.2e-114 417.9 347 66.6
Manes.07G103600 Manihot esculenta HOM05D003156 ORTHO05D003508 2.0e-114 417.2 378 63.8
Actinidia03046 Actinidia chinensis HOM05D003156 ORTHO05D003508 1.2e-111 407.9 344 64.0
Hma1.2p1_1203F.1_g266930 Hydrangea macrophylla HOM05D003156 ORTHO05D003508 2.5e-109 400.2 349 65.0
Manes.10G044400 Manihot esculenta HOM05D003156 ORTHO05D003508 3.6e-108 396.4 350 64.3
vmacro04882 Vaccinium macrocarpon HOM05D003156 ORTHO05D003508 6.2e-108 395.6 348 66.4
Nn2g10723 Nelumbo nucifera HOM05D003156 ORTHO05D003508 4.0e-107 392.9 344 61.3
MELO3C002897.2 Cucumis melo HOM05D003156 ORTHO05D003508 3.4e-106 389.8 342 62.6
Dinv31359 Davidia involucrata HOM05D003156 ORTHO05D003508 3.4e-106 389.8 290 72.1
Actinidia38262 Actinidia chinensis HOM05D003156 ORTHO05D003508 7.6e-106 388.7 342 62.0
Rhsim09G0153200 Rhododendron simsii HOM05D003156 ORTHO05D003508 7.6e-106 388.7 353 63.5
CsaV3_5G025770 Cucumis sativus L. HOM05D003156 ORTHO05D003508 8.4e-105 385.2 342 61.7
Gohir.D10G215300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 4.2e-104 382.9 353 61.2
Eucgr.G02815 Eucalyptus grandis HOM05D003156 ORTHO05D003508 7.1e-104 382.1 360 63.6
Lj2g0025480 Lotus japonicus HOM05D003156 ORTHO05D003508 9.3e-104 381.7 344 60.8
Nn2g13035 Nelumbo nucifera HOM05D003156 ORTHO05D003508 9.3e-104 381.7 341 60.7
Lalb_Chr02g0141981 Lupinus albus HOM05D003156 ORTHO05D003508 8.7e-102 375.2 342 61.7
Ca_04674_v3 Cicer arietinum L. HOM05D003156 ORTHO05D003508 1.1e-101 374.8 347 60.2
TAR081G0003 Trochodendron aralioides HOM05D003156 ORTHO05D003508 1.1e-101 374.8 342 59.9
Sed0017215 Sechium edule HOM05D003156 ORTHO05D003508 5.6e-101 372.5 382 56.3
EL10Ac2g03591 Beta vulgaris HOM05D003156 ORTHO05D003508 1.1e-99 368.2 359 59.3
Cc02_g11460 Coffea canephora HOM05D003156 ORTHO05D003508 1.1e-96 358.2 387 55.8
Lalb_Chr06g0162221 Lupinus albus HOM05D003156 ORTHO05D003508 1.3e-94 351.3 343 59.2
Sed0022604 Sechium edule HOM05D003156 ORTHO05D003508 1.3e-94 351.3 342 59.4
Nitab4.5_0004081g0040 Nicotiana tabacum HOM05D003156 ORTHO05D003508 6.7e-94 349.0 356 59.0
Nitab4.5_0000233g0120 Nicotiana tabacum HOM05D003156 ORTHO05D003508 1.1e-93 348.2 356 59.0
Solyc04g049120.4 Solanum lycopersicum HOM05D003156 ORTHO05D003508 1.9e-93 347.4 350 60.6
Sopen04g018550 Solanum pennellii HOM05D003156 ORTHO05D003508 4.3e-93 346.3 350 60.0
THA.LOC104819148 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 7.4e-93 345.5 349 54.7
ClCG05G020880 Citrullus lanatus HOM05D003156 ORTHO05D003508 2.8e-92 343.6 346 57.5
MELO3C012441.2 Cucumis melo HOM05D003156 ORTHO05D003508 8.2e-92 342.0 345 57.4
CAN.G131.2 Capsicum annuum HOM05D003156 ORTHO05D003508 1.8e-91 340.9 353 58.6
CsaV3_5G036430 Cucumis sativus L. HOM05D003156 ORTHO05D003508 4.0e-91 339.7 345 57.1
AUR62020759 Chenopodium quinoa HOM05D003156 ORTHO05D003508 3.4e-90 336.7 361 55.1
TAR633G1985 Trochodendron aralioides HOM05D003156 ORTHO05D003508 1.7e-89 334.3 342 56.7
Hund19345 Selenicereus undatus HOM05D003156 ORTHO05D003508 2.2e-89 334.0 360 56.7
Sed0017725 Sechium edule HOM05D003156 ORTHO05D003508 4.6e-87 326.2 344 55.5
Peaxi162Scf00108g00911 Petunia axillaris HOM05D003156 ORTHO05D003508 1.9e-85 320.9 355 58.9
TAR369G0611 Trochodendron aralioides HOM05D003156 ORTHO05D003508 2.2e-84 317.4 311 57.2
Sc20g0001950 Simmondsia chinensis HOM05D003156 ORTHO05D003508 4.8e-84 316.2 354 54.0
TPR.G36666 Trifolium pratense HOM05D003156 ORTHO05D003508 8.2e-84 315.5 341 53.1
MBI14_g09786_MAGBIO Magnolia biondii HOM05D003156 ORTHO05D003508 1.5e-82 311.2 362 52.2
Medtr6g033340 Medicago truncatula HOM05D003156 ORTHO05D003508 5.9e-82 309.3 351 53.8
AUR62027953 Chenopodium quinoa HOM05D003156 ORTHO05D003508 2.5e-80 303.9 294 58.8
Actinidia08029 Actinidia chinensis HOM05D003156 ORTHO05D003508 4.6e-79 299.7 318 53.8
Actinidia38263 Actinidia chinensis HOM05D003156 ORTHO05D003508 4.6e-79 299.7 331 52.9
Oeu007399.2 Olea europaea HOM05D003156 ORTHO05D003508 2.4e-75 287.3 381 51.2
Rhsim10G0111700 Rhododendron simsii HOM05D003156 ORTHO05D003508 9.1e-75 285.4 375 51.2
Psat1g100160 Pisum sativum HOM05D003156 ORTHO05D003508 4.5e-74 283.1 345 50.4
Aqoxy2G01803 Aquilegia oxysepala HOM05D003156 ORTHO05D003508 6.5e-73 279.3 358 49.7
Ah.11g043470 Amaranthus hybridus HOM05D003156 ORTHO05D003508 7.9e-71 272.3 377 46.7
MD12G1111400 Malus domestica HOM05D003156 ORTHO05D003508 1.5e-69 268.1 190 70.0
MSTRG.8149 Avicennia marina HOM05D003156 ORTHO05D003508 2.6e-69 267.3 386 46.6
SalBow3G0597 Salvia bowleyana HOM05D003156 ORTHO05D003508 9.1e-67 258.8 392 47.2
Sed0025548 Sechium edule HOM05D003156 ORTHO05D003508 2.6e-66 257.3 343 49.3
MSTRG.370 Avicennia marina HOM05D003156 ORTHO05D003508 3.5e-66 256.9 384 45.8
DCAR_006452 Daucus carota HOM05D003156 ORTHO05D003508 1.0e-65 255.4 348 48.6
THA.LOC104806084 Tarenaya hassleriana HOM05D003156 ORTHO05D003508 1.7e-65 254.6 433 41.3
Thhalv10010054m.g Eutrema salsugineum HOM05D003156 ORTHO05D003508 2.2e-65 254.2 437 39.1
Aa31LG10G7350 Aethionema arabicum HOM05D003156 ORTHO05D003508 3.8e-65 253.4 479 38.0
CARHR162010 Cardamine hirsuta HOM05D003156 ORTHO05D003508 1.1e-64 251.9 436 40.6
Carub.0005s1861 Capsella rubella HOM05D003156 ORTHO05D003508 5.5e-64 249.6 440 38.9
Ah.10g032860 Amaranthus hybridus HOM05D003156 ORTHO05D003508 9.4e-64 248.8 355 46.2
AL5G32840 Arabidopsis lyrata HOM05D003156 ORTHO05D003508 1.2e-63 248.4 442 39.1
AT3G52250 Arabidopsis thaliana HOM05D003156 ORTHO05D003508 3.9e-62 243.4 438 39.0
Oeu033854.1 Olea europaea HOM05D003156 ORTHO05D003508 5.2e-62 243.0 299 52.2
SGA_v2.0_scaffold341G49358 Striga asiatica HOM05D003156 ORTHO05D003508 6.3e-60 236.1 440 40.9
Migut.F01767 Erythranthe guttata HOM05D003156 ORTHO05D003508 3.5e-58 230.3 396 42.2
C08p27500 Brassica napus HOM05D003156 ORTHO05D003508 5.9e-58 229.6 438 38.8
BolC8t50370H Brassica oleracea HOM05D003156 ORTHO05D003508 1.3e-57 228.4 440 38.9
BraA09t39994Z Brassica rapa HOM05D003156 ORTHO05D003508 5.0e-57 226.5 438 38.6
SGA_v2.0_scaffold51G18682 Striga asiatica HOM05D003156 ORTHO05D003508 2.7e-55 220.7 470 37.7
PSO384G3096 Papaver somniferum HOM05D003156 ORTHO05D003508 4.7e-55 219.9 308 48.7
PSO339G2433 Papaver somniferum HOM05D003156 ORTHO05D003508 6.1e-55 219.5 308 48.4
SalBow4G2724 Salvia bowleyana HOM05D003156 ORTHO05D003508 2.3e-54 217.6 374 42.5
Lsat_1_v5_gn_2_113740 Lactuca sativa HOM05D003156 ORTHO05D003508 4.8e-52 209.9 362 44.2
A09p45310 Brassica napus HOM05D003156 ORTHO05D003508 9.1e-51 205.7 438 37.2
Hma1.2p1_2975F.1_g331150 Hydrangea macrophylla HOM05D003156 ORTHO05D003508 3.2e-48 197.2 347 43.5
HanXRQChr14g0457261 Helianthus annuus HOM05D003156 ORTHO05D003508 2.0e-45 188.0 358 42.2
BcaC07g39597 Brassica carinata HOM05D003156 ORTHO05D003508 4.1e-43 180.3 391 36.8
Oeu014390.1 Olea europaea HOM05D003156 ORTHO05D003508 1.6e-42 178.3 384 37.8
Gohir.D05G297300 Gossypium hirsutum HOM05D003156 ORTHO05D003508 5.9e-42 176.4 178 58.4
Actinidia03045 Actinidia chinensis HOM05D003156 ORTHO05D003508 2.3e-41 174.5 339 38.3
PGR044G0836 Punica granatum HOM05D003156 ORTHO05D003508 6.6e-41 172.9 344 39.8
Oeu043931.1 Olea europaea HOM05D003156 ORTHO05D003508 3.3e-40 170.6 164 62.8
Oeu042736.1 Olea europaea HOM05D003156 ORTHO05D003508 7.2e-40 169.5 178 59.6
HanXRQChr11g0323301 Helianthus annuus HOM05D003156 ORTHO05D003508 1.8e-38 164.9 236 48.3
MD12G1111500 Malus domestica HOM05D003156 ORTHO05D003508 5.2e-38 163.3 121 70.2
Sp5g10010 Schrenkiella parvula HOM05D003156 ORTHO05D003508 6.8e-38 162.9 368 37.2
CDE02G1002 Ceratophyllum demersum HOM05D003156 ORTHO05D003508 1.2e-37 162.2 264 42.0
BraA03t13976Z Brassica rapa HOM05D003156 ORTHO05D003508 1.3e-36 158.7 434 34.6
C07p46850 Brassica napus HOM05D003156 ORTHO05D003508 4.9e-36 156.8 438 33.3
BolC7t45201H Brassica oleracea HOM05D003156 ORTHO05D003508 4.9e-36 156.8 438 33.3
A03p48760 Brassica napus HOM05D003156 ORTHO05D003508 1.4e-35 155.2 433 33.9
ECA238G0789 Erigeron canadensis HOM05D003156 ORTHO05D003508 2.0e-34 151.4 233 47.2
unitig_0.g194 Utricularia gibba HOM05D003156 ORTHO05D003508 3.9e-33 147.1 361 33.5
unitig_60.g25703 Utricularia gibba HOM05D003156 ORTHO05D003508 5.6e-32 143.3 450 32.9
Gohir.A05G297400 Gossypium hirsutum HOM05D003156 ORTHO05D003508 4.7e-31 140.2 192 50.0
ATR0314G009 Amborella trichopoda HOM05D003156 ORTHO05D003508 2.6e-29 134.4 390 34.9
Lsat_1_v5_gn_2_113780 Lactuca sativa HOM05D003156 ORTHO05D003508 2.4e-27 127.9 359 33.7
DCAR_019123 Daucus carota HOM05D003156 ORTHO05D003508 1.1e-24 119.0 361 30.5
HPP92_006757 Vanilla planifolia HOM05D003156 ORTHO05D003508 4.3e-24 117.1 293 37.5
Duzib106G1668 Durio zibethinus HOM05D003156 ORTHO05D003508 8.4e-12 76.3 60 70.0
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 1.4e-11 75.5 81 49.4
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 1.6e-10 72.0 129 36.4
SEGI_14396 Sequoiadendron giganteum HOM05D003156 ORTHO05D003508 2.8e-07 61.2 243 30.0


User provided reference genes

Program Settings