Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16414 Corylus avellana HOM05D001129 ORTHO05D034882 1.2e-56 223.0 122 100.0
Haze_16417 Corylus avellana HOM05D001129 ORTHO05D034882 1.2e-56 223.0 122 100.0
Haze_16419 Corylus avellana HOM05D001129 ORTHO05D034882 4.0e-55 218.0 122 98.4
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 3.1e-15 85.5 51 84.3
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 1.5e-14 83.2 51 74.5
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 3.4e-14 82.0 51 82.4
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 2.9e-13 79.0 71 60.6
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 6.4e-13 77.8 103 50.5
CAN.G3.33 Capsicum annuum HOM05D001129 ORTHO05D003814 1.1e-12 77.0 65 63.1
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.1e-12 77.0 99 50.5
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 1.4e-12 76.6 103 48.5
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.4e-12 76.6 103 49.5
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 1.4e-12 76.6 99 50.5
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 1.4e-12 76.6 103 49.5
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 1.9e-12 76.3 103 49.5
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 2.4e-12 75.9 103 49.5
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 3.2e-12 75.5 103 48.5
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 3.2e-12 75.5 103 48.5
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 3.2e-12 75.5 83 55.4
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 5.4e-12 74.7 87 50.6
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 5.4e-12 74.7 83 54.2
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 5.4e-12 74.7 99 50.5
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 7.1e-12 74.3 99 49.5
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 9.3e-12 73.9 73 58.9
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 1.2e-11 73.6 99 49.5
arahy.Tifrunner.gnm1.ann1.MP07WF Arachis hypogaea HOM05D001129 ORTHO05D003814 1.2e-11 73.6 97 47.4
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 1.6e-11 73.2 39 89.7
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 1.6e-11 73.2 39 89.7
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 1.6e-11 73.2 39 89.7
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 2.1e-11 72.8 103 46.6
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 2.1e-11 72.8 103 46.6
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 2.1e-11 72.8 87 50.6
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 2.1e-11 72.8 87 51.7
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 2.7e-11 72.4 83 54.2
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 3.5e-11 72.0 103 46.6
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 3.5e-11 72.0 87 51.7
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 3.5e-11 72.0 99 48.5
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 4.6e-11 71.6 87 49.4
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 4.6e-11 71.6 99 48.5
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 4.6e-11 71.6 87 51.7
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 4.6e-11 71.6 103 46.6
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 6.0e-11 71.2 83 53.0
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.0e-11 71.2 83 53.0
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 6.0e-11 71.2 83 53.0
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 6.0e-11 71.2 83 50.6
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 7.9e-11 70.9 83 54.2
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 7.9e-11 70.9 87 48.3
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 7.9e-11 70.9 83 53.0
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 7.9e-11 70.9 87 50.6
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 1.3e-10 70.1 87 49.4
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 1.3e-10 70.1 99 46.5
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.8e-10 69.7 83 51.8
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 1.8e-10 69.7 83 51.8
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 2.3e-10 69.3 99 44.4
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.3e-10 69.3 59 64.4
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 2.3e-10 69.3 83 49.4
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 2.3e-10 69.3 99 47.5
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 3.9e-10 68.6 83 50.6
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 3.9e-10 68.6 87 47.1
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 3.9e-10 68.6 83 50.6
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 5.1e-10 68.2 99 46.5
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 5.1e-10 68.2 55 63.6
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 5.1e-10 68.2 83 48.2
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 6.7e-10 67.8 103 44.7
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 6.7e-10 67.8 68 55.9
BcaC07g42547 Brassica carinata HOM05D001129 ORTHO05D003814 8.7e-10 67.4 82 51.2
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.7e-10 67.4 103 43.7
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 8.7e-10 67.4 87 47.1
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 8.7e-10 67.4 87 47.1
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 8.7e-10 67.4 99 43.4
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 8.7e-10 67.4 55 65.5
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 1.1e-09 67.0 87 47.1
Gohir.D07G130166 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.1e-09 67.0 55 63.6
Gorai.011G096400 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.1e-09 67.0 39 79.5
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 1.1e-09 67.0 103 44.7
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 1.1e-09 67.0 55 65.5
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.5e-09 66.6 83 49.4
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 1.9e-09 66.2 39 82.1
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 2.5e-09 65.9 53 66.0
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 2.5e-09 65.9 83 48.2
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 2.5e-09 65.9 103 41.7
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 2.5e-09 65.9 99 43.4
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 3.3e-09 65.5 55 60.0
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.3e-09 65.5 55 60.0
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.3e-09 65.5 55 60.0
Gohir.D09G051901 Gossypium hirsutum HOM05D001129 ORTHO05D003814 3.3e-09 65.5 39 79.5
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 3.3e-09 65.5 99 45.5
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 3.3e-09 65.5 39 76.9
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 4.3e-09 65.1 83 49.4
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 4.3e-09 65.1 105 44.8
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 5.6e-09 64.7 39 82.1
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 5.6e-09 64.7 39 82.1
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 7.4e-09 64.3 81 49.4
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 7.4e-09 64.3 83 48.2
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 7.4e-09 64.3 83 48.2
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 9.6e-09 63.9 99 45.5
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 1.3e-08 63.5 83 48.2
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 1.3e-08 63.5 73 49.3
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 1.6e-08 63.2 83 50.6
Gorai.009G402100 Gossypium raimondii HOM05D001129 ORTHO05D003814 2.1e-08 62.8 39 76.9
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.1e-08 62.8 83 45.8
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 2.8e-08 62.4 103 42.7
Gorai.001G201100 Gossypium raimondii HOM05D001129 ORTHO05D003814 2.8e-08 62.4 39 76.9
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 3.7e-08 62.0 87 44.8
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 3.7e-08 62.0 87 44.8
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 3.7e-08 62.0 87 44.8
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 3.7e-08 62.0 87 44.8
Gorai.009G417200 Gossypium raimondii HOM05D001129 ORTHO05D003814 3.7e-08 62.0 39 74.4
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 3.7e-08 62.0 103 41.7
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 3.7e-08 62.0 83 48.2
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 4.8e-08 61.6 87 42.5
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 6.2e-08 61.2 103 41.7
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 6.2e-08 61.2 103 41.7
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 6.2e-08 61.2 103 41.7
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 6.2e-08 61.2 103 41.7
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 6.2e-08 61.2 103 41.7
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 6.2e-08 61.2 55 58.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 8.1e-08 60.8 103 40.8
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 8.1e-08 60.8 78 46.2
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.1e-07 60.5 103 40.8
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 1.4e-07 60.1 103 39.8
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.4e-07 60.1 99 41.4
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 1.4e-07 60.1 99 41.4
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 1.8e-07 59.7 83 45.8
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 4.0e-07 58.5 55 54.5
Gohir.D03G054201 Gossypium hirsutum HOM05D001129 ORTHO05D015145 4.0e-07 58.5 35 80.0
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 5.3e-07 58.2 83 44.6
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 5.3e-07 58.2 99 38.4
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 6.9e-07 57.8 39 66.7
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 1.5e-06 56.6 99 38.4
Gohir.D11G291701 Gossypium hirsutum HOM05D001129 ORTHO05D015145 1.5e-06 56.6 35 77.1
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 4.5e-06 55.1 87 41.4
COL.COLO4_06002 Corchorus olitorius HOM05D001129 ORTHO05D015438 1.0e-05 53.9 36 69.4


User provided reference genes

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