Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16237 Corylus avellana HOM05D000989 ORTHO05D006109 1.1e-81 306.6 159 100.0
Cfa023514 Carpinus fangiana HOM05D000989 ORTHO05D006109 6.8e-71 270.8 150 93.3
QL05p085514 Quercus lobata HOM05D000989 ORTHO05D006109 2.3e-55 219.2 155 75.5
CiPaw.01G093100 Carya illinoinensis HOM05D000989 ORTHO05D006109 1.3e-53 213.4 153 73.2
Atru.chr3.4104 Acer truncatum HOM05D000989 ORTHO05D006109 2.4e-52 209.1 152 71.1
Sabra07G0002000 Salix brachista HOM05D000989 ORTHO05D006109 1.6e-51 206.5 165 64.8
Potri.007G002700 Populus trichocarpa HOM05D000989 ORTHO05D006109 5.9e-51 204.5 156 67.9
Ciclev10028538m.g Citrus clementina HOM05D000989 ORTHO05D006109 1.7e-50 203.0 155 67.1
Prupe.3G027000 Prunus persica HOM05D000989 ORTHO05D006109 6.6e-50 201.1 154 68.2
Thecc.06G052000 Theobroma cacao HOM05D000989 ORTHO05D006109 6.6e-50 201.1 157 66.2
Dinv20318 Davidia involucrata HOM05D000989 ORTHO05D006109 1.1e-49 200.3 160 63.8
Sabra14G0002700 Salix brachista HOM05D000989 ORTHO05D006109 2.5e-49 199.1 156 66.0
Potri.014G001100 Populus trichocarpa HOM05D000989 ORTHO05D006109 3.3e-49 198.7 156 66.0
Sabra14G0003500 Salix brachista HOM05D000989 ORTHO05D006109 4.3e-49 198.4 156 65.4
Duzib192G0753 Durio zibethinus HOM05D000989 ORTHO05D006109 7.3e-49 197.6 157 65.6
GSVIVG01029461001 Vitis vinifera HOM05D000989 ORTHO05D006109 7.3e-49 197.6 153 68.0
FvH4_6g36480 Fragaria vesca HOM05D000989 ORTHO05D006109 9.5e-49 197.2 149 68.5
FAN14G2118 Fragaria x ananassa HOM05D000989 ORTHO05D006109 9.5e-49 197.2 149 68.5
Manes.14G000100 Manihot esculenta HOM05D000989 ORTHO05D006109 9.5e-49 197.2 155 65.2
RcHm_v2.0_Chr2g0148611 Rosa chinensis HOM05D000989 ORTHO05D006109 9.5e-49 197.2 150 70.0
MD09G1168600 Malus domestica HOM05D000989 ORTHO05D006109 2.8e-48 195.7 153 67.3
Actinidia38817 Actinidia chinensis HOM05D000989 ORTHO05D006109 4.7e-48 194.9 160 63.1
Hma1.2p1_0141F.1_g064000 Hydrangea macrophylla HOM05D000989 ORTHO05D006109 1.8e-47 193.0 158 63.3
FAN02G4168 Fragaria x ananassa HOM05D000989 ORTHO05D006109 4.0e-47 191.8 156 66.7
COL.COLO4_19515 Corchorus olitorius HOM05D000989 ORTHO05D006109 5.2e-47 191.4 157 63.1
FAN05G4662 Fragaria x ananassa HOM05D000989 ORTHO05D006109 2.0e-46 189.5 156 66.0
Gorai.009G120600 Gossypium raimondii HOM05D000989 ORTHO05D006109 2.6e-46 189.1 157 61.8
Lj3g0006607 Lotus japonicus HOM05D000989 ORTHO05D006109 7.5e-46 187.6 155 64.5
Gohir.D05G116600 Gossypium hirsutum HOM05D000989 ORTHO05D006109 1.7e-45 186.4 157 61.1
FAN09G3581 Fragaria x ananassa HOM05D000989 ORTHO05D006109 2.2e-45 186.0 158 63.3
Gohir.A05G116032 Gossypium hirsutum HOM05D000989 ORTHO05D006109 2.2e-45 186.0 157 60.5
Lj5A20T31 Lonicera japonica HOM05D000989 ORTHO05D006109 2.9e-45 185.7 152 64.5
MD17G1158100 Malus domestica HOM05D000989 ORTHO05D006109 2.9e-45 185.7 153 65.4
Sed0020073 Sechium edule HOM05D000989 ORTHO05D006109 6.4e-45 184.5 143 69.2
Glyma.08G226000 Glycine max HOM05D000989 ORTHO05D006109 1.1e-44 183.7 157 63.7
TWI12G0396 Tripterygium wilfordii HOM05D000989 ORTHO05D006109 1.1e-44 183.7 155 61.3
ClCG05G012260 Citrullus lanatus HOM05D000989 ORTHO05D006109 1.4e-44 183.3 156 63.5
Rhsim08G0251900 Rhododendron simsii HOM05D000989 ORTHO05D006109 2.4e-44 182.6 158 59.5
Glyma.07G001000 Glycine max HOM05D000989 ORTHO05D006109 3.2e-44 182.2 157 64.3
CSS0036335 Camellia sinensis var. sinensis HOM05D000989 ORTHO05D006109 4.1e-44 181.8 160 60.0
CsaV3_3G020170 Cucumis sativus L. HOM05D000989 ORTHO05D006109 9.2e-44 180.6 144 68.1
Phvul.010G165300 Phaseolus vulgaris HOM05D000989 ORTHO05D006109 2.0e-43 179.5 157 61.8
Eucgr.F04053 Eucalyptus grandis HOM05D000989 ORTHO05D006109 2.7e-43 179.1 150 63.3
Ca_03771_v3 Cicer arietinum L. HOM05D000570 ORTHO05D001174 6.0e-43 177.9 143 66.4
Thhalv10011546m.g Eutrema salsugineum HOM05D000989 ORTHO05D006109 2.3e-42 176.0 155 57.4
Duzib235G1336 Durio zibethinus HOM05D000989 ORTHO05D006109 3.0e-42 175.6 150 62.0
SGA_v2.0_scaffold122G33258 Striga asiatica HOM05D000989 ORTHO05D006109 3.0e-42 175.6 147 65.3
CANSAT01G0659 Cannabis sativa HOM05D000989 ORTHO05D006109 3.9e-42 175.3 157 58.6
Thhalv10020844m.g Eutrema salsugineum HOM05D000989 ORTHO05D006109 1.1e-41 173.7 163 57.7
VMungo0331G0118 Vigna mungo HOM05D000989 ORTHO05D006109 1.1e-41 173.7 157 61.1
MELO3C023731.2 Cucumis melo HOM05D000989 ORTHO05D006109 2.5e-41 172.6 144 63.2
BraSC56t46391Z Brassica rapa HOM05D000989 ORTHO05D006109 3.3e-41 172.2 149 58.4
Medtr4g005140 Medicago truncatula HOM05D000989 ORTHO05D006109 3.3e-41 172.2 155 60.0
Nn8g41214 Nelumbo nucifera HOM05D000989 ORTHO05D006109 5.6e-41 171.4 159 57.2
Aqoxy7G02659 Aquilegia oxysepala HOM05D000989 ORTHO05D006109 7.3e-41 171.0 154 57.8
Carub.0001s4457 Capsella rubella HOM05D000989 ORTHO05D006109 7.3e-41 171.0 153 56.9
AL1G64210 Arabidopsis lyrata HOM05D000989 ORTHO05D006109 9.5e-41 170.6 153 56.9
Carub.0003s1239 Capsella rubella HOM05D000989 ORTHO05D006109 9.5e-41 170.6 156 59.0
MBI16_g00831_MAGBIO Magnolia biondii HOM05D000989 ORTHO05D006109 9.5e-41 170.6 147 59.2
PSO170G5971 Papaver somniferum HOM05D000989 ORTHO05D006109 9.5e-41 170.6 161 55.9
arahy.Tifrunner.gnm1.ann1.ECX43N Arachis hypogaea HOM05D000989 ORTHO05D006109 1.2e-40 170.2 159 57.2
Sp1g41570 Schrenkiella parvula HOM05D000989 ORTHO05D006109 1.2e-40 170.2 155 56.1
TAR383G0471 Trochodendron aralioides HOM05D000989 ORTHO05D006109 1.2e-40 170.2 150 61.3
BraA03t12954Z Brassica rapa HOM05D000989 ORTHO05D006109 1.6e-40 169.9 155 58.1
Aa31LG10G220 Aethionema arabicum HOM05D000989 ORTHO05D006109 2.1e-40 169.5 150 58.7
CARHR087630 Cardamine hirsuta HOM05D000989 ORTHO05D006109 2.8e-40 169.1 158 58.2
BcaC08g43665 Brassica carinata HOM05D000989 ORTHO05D006109 3.6e-40 168.7 153 57.5
BolC6t36168H Brassica oleracea HOM05D000989 ORTHO05D006109 3.6e-40 168.7 153 57.5
PSO063G2540 Papaver somniferum HOM05D000989 ORTHO05D006109 3.6e-40 168.7 161 55.3
PGR102G0324 Punica granatum HOM05D000989 ORTHO05D006109 3.6e-40 168.7 153 58.8
AUR62001309 Chenopodium quinoa HOM05D000989 ORTHO05D006109 4.7e-40 168.3 160 57.5
AT1G55960 Arabidopsis thaliana HOM05D000989 ORTHO05D006109 6.2e-40 167.9 159 56.6
C06p10850 Brassica napus HOM05D000989 ORTHO05D006109 1.1e-39 167.2 153 57.5
Gorai.005G119500 Gossypium raimondii HOM05D000989 ORTHO05D006109 1.1e-39 167.2 152 58.6
EL10Ac7g18115 Beta vulgaris HOM05D000989 ORTHO05D006109 1.4e-39 166.8 158 57.0
Hund05662 Selenicereus undatus HOM05D000989 ORTHO05D006109 1.4e-39 166.8 154 59.1
Migut.I01212 Erythranthe guttata HOM05D000989 ORTHO05D006109 1.8e-39 166.4 149 59.1
CARHR045700 Cardamine hirsuta HOM05D000989 ORTHO05D006109 2.3e-39 166.0 157 56.1
Gohir.D02G105300 Gossypium hirsutum HOM05D000989 ORTHO05D006109 2.3e-39 166.0 152 58.6
TPR.G38747 Trifolium pratense HOM05D000989 ORTHO05D006109 2.3e-39 166.0 151 60.3
BraA01t04080Z Brassica rapa HOM05D000570 ORTHO05D006109 3.1e-39 165.6 156 58.3
A03p38020 Brassica napus HOM05D000989 ORTHO05D006109 4.0e-39 165.2 155 57.4
C03p46110 Brassica napus HOM05D000989 ORTHO05D006109 5.2e-39 164.9 155 58.1
BolC3t16883H Brassica oleracea HOM05D000989 ORTHO05D006109 5.2e-39 164.9 155 58.1
A01p40460 Brassica napus HOM05D000989 ORTHO05D006109 8.9e-39 164.1 156 57.7
HanXRQChr09g0277441 Helianthus annuus HOM05D000989 ORTHO05D006109 8.9e-39 164.1 143 54.5
THA.LOC104815704 Tarenaya hassleriana HOM05D000989 ORTHO05D006109 8.9e-39 164.1 148 58.1
TAR626G0219 Trochodendron aralioides HOM05D000989 ORTHO05D006109 8.9e-39 164.1 145 60.7
TAR626G0832 Trochodendron aralioides HOM05D000989 ORTHO05D006109 8.9e-39 164.1 145 60.7
AL3G24790 Arabidopsis lyrata HOM05D000989 ORTHO05D006109 1.2e-38 163.7 159 54.7
Psat7g264760 Pisum sativum HOM05D000570 ORTHO05D001174 1.5e-38 163.3 135 60.7
Lsat_1_v5_gn_4_106160 Lactuca sativa HOM05D000989 ORTHO05D006109 2.0e-38 162.9 137 59.1
MSTRG.11572 Avicennia marina HOM05D000989 ORTHO05D006109 2.6e-38 162.5 160 54.4
AT3G13062 Arabidopsis thaliana HOM05D000989 ORTHO05D006109 3.4e-38 162.2 159 54.1
BcaB07g33179 Brassica carinata HOM05D000989 ORTHO05D006109 3.4e-38 162.2 150 58.0
SalBow6G4719 Salvia bowleyana HOM05D000989 ORTHO05D006109 4.4e-38 161.8 151 57.6
Sp3g11220 Schrenkiella parvula HOM05D000989 ORTHO05D006109 5.8e-38 161.4 159 56.6
Gohir.A03G088600 Gossypium hirsutum HOM05D000989 ORTHO05D006109 7.5e-38 161.0 152 56.6
Atru.chr3.4101 Acer truncatum HOM05D000989 ORTHO05D006109 1.3e-37 160.2 130 65.4
C01p52050 Brassica napus HOM05D000989 ORTHO05D006109 3.7e-37 158.7 156 56.4
BolC1t05148H Brassica oleracea HOM05D000989 ORTHO05D006109 3.7e-37 158.7 156 56.4
SGA_v2.0_scaffold71G24021 Striga asiatica HOM05D000989 ORTHO05D006109 6.4e-37 157.9 155 54.8
AUR62025691 Chenopodium quinoa HOM05D000989 ORTHO05D006109 1.1e-36 157.1 154 55.8
Nitab4.5_0000499g0090 Nicotiana tabacum HOM05D000989 ORTHO05D006109 3.2e-36 155.6 149 55.7
CAN.G790.1 Capsicum annuum HOM05D000989 ORTHO05D006109 5.4e-36 154.8 159 52.8
ECA232G1648 Erigeron canadensis HOM05D000989 ORTHO05D006109 1.2e-35 153.7 137 54.7
Peaxi162Scf00684g00414 Petunia axillaris HOM05D000989 ORTHO05D006109 1.2e-35 153.7 145 57.9
ECA233G3623 Erigeron canadensis HOM05D001953 ORTHO05D006109 2.1e-35 152.9 133 55.6
Sopen03g041790 Solanum pennellii HOM05D000989 ORTHO05D006109 2.7e-35 152.5 149 55.7
THA.LOC104822743 Tarenaya hassleriana HOM05D000989 ORTHO05D006109 3.5e-35 152.1 153 53.6
Solyc03g124060.3 Solanum lycopersicum HOM05D000989 ORTHO05D006109 4.6e-35 151.8 149 55.7
ATR0626G329 Amborella trichopoda HOM05D000989 ORTHO05D006109 6.0e-35 151.4 150 57.3
Ah.08g217990 Amaranthus hybridus HOM05D000989 ORTHO05D006109 3.0e-34 149.1 154 50.0
BcaC01g04007 Brassica carinata HOM05D000989 ORTHO05D006109 3.0e-34 149.1 155 54.8
Sc15g0001170 Simmondsia chinensis HOM05D000989 ORTHO05D006109 1.5e-33 146.7 165 51.5
arahy.Tifrunner.gnm1.ann1.FCN3VB Arachis hypogaea HOM05D000989 ORTHO05D006109 1.2e-32 143.7 202 45.5
DCAR_007676 Daucus carota HOM05D000989 ORTHO05D006109 2.8e-32 142.5 145 53.8
Nn5g26976 Nelumbo nucifera HOM05D000989 ORTHO05D006109 1.4e-31 140.2 136 55.9
Oeu035084.1 Olea europaea HOM05D000989 ORTHO05D006109 2.3e-31 139.4 145 53.1
HPP92_018325 Vanilla planifolia HOM05D000989 ORTHO05D006109 2.3e-31 139.4 155 49.7
CDE05G3314 Ceratophyllum demersum HOM05D000989 ORTHO05D006109 6.8e-31 137.9 143 54.5
vmacro18725 Vaccinium macrocarpon HOM05D000989 ORTHO05D006109 1.5e-30 136.7 266 35.7
PGSC0003DMG400009197 Solanum tuberosum HOM05D000989 ORTHO05D006109 3.4e-30 135.6 149 52.3
CDE05G1780 Ceratophyllum demersum HOM05D000989 ORTHO05D006109 9.9e-30 134.0 151 51.7
Nitab4.5_0004098g0010 Nicotiana tabacum HOM05D000989 ORTHO05D006109 2.9e-29 132.5 149 51.0
SEGI_20704 Sequoiadendron giganteum HOM05D000989 ORTHO05D006109 6.0e-27 124.8 152 50.0
Zm00001eb240920 Zea mays HOM05D000989 ORTHO05D006109 7.8e-27 124.4 154 44.2
Zm00001eb082000 Zea mays HOM05D000989 ORTHO05D006109 1.3e-26 123.6 154 44.2
Cc04_g00100 Coffea canephora HOM05D000989 ORTHO05D006109 4.3e-25 118.6 124 51.6
RcHm_v2.0_Chr1g0356301 Rosa chinensis HOM05D000989 ORTHO05D006109 7.3e-25 117.9 69 82.6
Os02g0468400 Oryza sativa ssp. japonica HOM05D000989 ORTHO05D006109 2.8e-24 115.9 156 39.7
Pp3c23_14010 Physcomitrium patens HOM05D000989 ORTHO05D006109 2.8e-24 115.9 150 43.3
Cpa.g.sc10.6 Carica papaya HOM05D000989 ORTHO05D006109 3.1e-23 112.5 66 81.8
Zm00001eb043190 Zea mays HOM05D004148 ORTHO05D006109 4.3e-17 92.0 117 42.7
Mapoly0020s0077 Marchantia polymorpha HOM05D000989 ORTHO05D006109 4.8e-16 88.6 136 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3861 Anthoceros agrestis HOM05D000989 ORTHO05D006109 1.4e-15 87.0 163 35.0
SMO364G0840 Selaginella moellendorffii HOM05D000989 ORTHO05D006109 1.8e-15 86.7 142 38.0
SGA_v2.0_scaffold71G24020 Striga asiatica HOM05D000011 ORTHO05D000018 1.2e-11 73.9 90 45.6
MBI15_g24506_MAGBIO Magnolia biondii HOM05D000989 ORTHO05D006109 2.5e-09 66.2 38 78.9
MBI11_g16498_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 4.8e-08 62.0 78 41.0
Sed0002503 Sechium edule HOM05D000989 ORTHO05D001287 1.5e-06 57.0 112 34.8


User provided reference genes

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