Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 4.3e-40 167.5 84 100.0
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.1e-30 134.8 107 70.1
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 3.1e-30 134.8 107 70.1
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 1.2e-26 122.9 107 62.6
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 1.2e-26 122.9 107 63.6
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.2e-26 122.9 107 63.6
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.0e-26 122.1 107 62.6
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.7e-26 121.7 107 61.7
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 2.7e-26 121.7 107 61.7
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.5e-26 121.3 107 62.6
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 6.0e-26 120.6 107 60.7
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 6.0e-26 120.6 107 61.7
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 1.7e-25 119.0 107 59.8
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.3e-25 118.6 107 61.7
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 2.3e-25 118.6 107 60.7
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 3.0e-25 118.2 107 59.8
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 3.0e-25 118.2 107 61.7
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 3.0e-25 118.2 107 59.8
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.9e-25 117.9 107 60.7
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.5e-24 115.9 107 58.9
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.9e-24 115.5 106 60.4
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.9e-24 115.5 107 59.8
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.9e-24 115.5 107 59.8
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-24 115.2 107 58.9
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.5e-24 115.2 107 58.9
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 2.5e-24 115.2 107 58.9
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.5e-24 115.2 107 59.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 3.3e-24 114.8 107 58.9
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.3e-24 114.8 107 57.9
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 4.3e-24 114.4 107 58.9
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 5.6e-24 114.0 106 60.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 5.6e-24 114.0 107 57.9
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 5.6e-24 114.0 107 57.9
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 5.6e-24 114.0 107 57.9
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 9.5e-24 113.2 109 59.6
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 9.5e-24 113.2 107 56.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 9.5e-24 113.2 107 57.0
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.2e-23 112.8 107 57.0
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.6e-23 112.5 107 56.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 2.1e-23 112.1 107 58.9
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.8e-23 111.7 104 59.6
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 3.6e-23 111.3 107 56.1
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 4.7e-23 110.9 107 57.0
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 4.7e-23 110.9 106 54.7
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.7e-23 110.9 107 55.1
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 6.2e-23 110.5 108 59.3
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 8.1e-23 110.2 106 55.7
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.8e-22 109.0 106 55.7
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.3e-22 108.6 107 53.3
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 4.0e-22 107.8 103 58.3
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 4.0e-22 107.8 105 58.1
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 4.0e-22 107.8 106 55.7
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 5.2e-22 107.5 107 55.1
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 5.2e-22 107.5 106 55.7
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.8e-22 107.1 106 55.7
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.2e-21 106.3 107 54.2
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 1.2e-21 106.3 107 53.3
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.5e-21 105.9 107 54.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 2.0e-21 105.5 103 57.3
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-21 105.5 107 52.3
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 2.0e-21 105.5 107 52.3
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.0e-21 105.5 107 54.2
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-21 105.1 107 53.3
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 2.6e-21 105.1 107 53.3
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-21 104.8 110 55.5
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 3.4e-21 104.8 110 55.5
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 5.8e-21 104.0 107 51.4
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 5.8e-21 104.0 107 52.3
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 7.5e-21 103.6 106 53.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 7.5e-21 103.6 106 53.8
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 7.5e-21 103.6 107 52.3
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 7.5e-21 103.6 107 52.3
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 7.5e-21 103.6 107 52.3
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.3e-20 102.8 106 52.8
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 1.7e-20 102.4 106 52.8
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.7e-20 102.4 106 52.8
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.7e-20 102.4 106 52.8
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 1.7e-20 102.4 106 52.8
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 2.2e-20 102.1 106 51.9
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 2.2e-20 102.1 107 50.5
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-20 102.1 60 80.0
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 2.9e-20 101.7 110 54.5
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 2.9e-20 101.7 106 50.9
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.7e-20 101.3 108 50.0
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 3.7e-20 101.3 108 50.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 3.7e-20 101.3 108 53.7
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 3.7e-20 101.3 107 49.5
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 6.4e-20 100.5 106 51.9
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 6.4e-20 100.5 107 49.5
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.4e-19 99.4 106 49.1
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 4.1e-19 97.8 106 50.0
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 5.4e-19 97.4 60 76.7
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 7.1e-19 97.1 104 51.0
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 7.1e-19 97.1 60 78.3
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 7.1e-19 97.1 77 64.9
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.2e-18 96.3 60 78.3
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 1.2e-18 96.3 106 50.0
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.6e-18 95.9 105 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 6.0e-18 94.0 95 50.5
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 6.0e-18 94.0 101 46.5
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 6.0e-18 94.0 105 47.6
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 7.8e-18 93.6 101 48.5
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-17 92.8 60 71.7
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-17 92.8 60 71.7
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.3e-17 92.8 101 47.5
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 6.6e-17 90.5 60 73.3
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.9e-16 89.0 106 44.3
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 5.6e-16 87.4 102 48.0
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 5.6e-16 87.4 102 48.0
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 9.5e-16 86.7 106 46.2
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.2e-15 86.3 106 46.2
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 6.2e-15 84.0 101 38.6
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 8.1e-15 83.6 106 45.3
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-14 83.2 60 68.3
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 2.4e-14 82.0 99 41.4
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 8.9e-14 80.1 58 60.3
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 7.6e-13 77.0 106 45.3
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-12 76.3 44 81.8
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 8.4e-12 73.6 99 35.4
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 9.2e-11 70.1 76 53.9
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 2.1e-10 68.9 85 49.4
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.0e-09 66.6 58 48.3
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.0e-09 66.6 83 47.0
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-09 65.9 83 45.8
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.1e-08 63.2 72 51.4
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.1e-07 58.9 100 30.0
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-06 56.6 30 90.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-06 56.6 30 90.0
SHI51578 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-06 56.2 32 81.2
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 3.1e-06 55.1 76 44.7
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 3.1e-06 55.1 69 46.4
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 4.0e-06 54.7 75 46.7
SHI51181 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-06 54.3 41 58.5
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 5.2e-06 54.3 32 81.2
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 6.9e-06 53.9 103 28.2


User provided reference genes

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