Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-130 469.2 279 100.0
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 5.6e-119 431.4 265 94.7
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 3.1e-117 425.6 263 93.9
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 5.8e-116 421.4 263 93.5
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 6.3e-94 348.2 264 71.2
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.7e-91 340.1 265 69.4
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 2.2e-86 323.2 264 73.5
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 7.7e-84 314.7 266 68.0
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 7.7e-84 314.7 266 68.0
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 7.7e-84 314.7 263 63.1
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 5.0e-83 312.0 278 63.3
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 6.5e-83 311.6 264 64.0
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 2.5e-82 309.7 277 63.9
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 2.7e-81 306.2 265 72.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 6.1e-81 305.1 262 64.1
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 5.2e-80 302.0 267 62.5
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 8.8e-80 301.2 266 67.3
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 7.5e-79 298.1 265 60.4
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 9.7e-79 297.7 262 63.0
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 1.7e-78 297.0 265 61.5
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 6.3e-78 295.0 270 67.0
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.4e-77 293.9 268 62.7
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 1.8e-77 293.5 266 60.5
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 5.3e-77 292.0 267 59.2
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 2.0e-76 290.0 265 58.1
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.0e-75 287.7 268 66.4
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.3e-75 287.3 268 60.1
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.3e-75 287.3 268 60.1
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 8.5e-75 284.6 261 61.7
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 8.5e-75 284.6 267 57.7
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 1.9e-74 283.5 270 58.9
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 2.5e-74 283.1 266 59.4
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 9.4e-74 281.2 263 58.9
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 9.4e-74 281.2 296 54.7
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 2.7e-73 279.6 265 56.6
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 4.0e-72 275.8 260 60.0
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.6e-71 273.1 266 58.3
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 2.6e-71 273.1 263 58.9
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 9.8e-71 271.2 263 57.4
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 1.3e-70 270.8 266 59.8
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.3e-70 270.8 262 58.8
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 4.8e-70 268.9 261 57.5
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 1.1e-69 267.7 263 58.2
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 4.1e-69 265.8 264 55.7
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.2e-68 264.2 257 56.4
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.2e-68 264.2 265 58.1
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 1.6e-68 263.8 264 58.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.6e-68 263.8 269 61.0
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.0e-68 263.5 262 62.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 3.5e-68 262.7 265 55.8
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 3.5e-68 262.7 262 55.7
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.5e-68 262.7 262 55.7
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 4.5e-68 262.3 266 54.5
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 7.7e-68 261.5 267 56.6
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 2.9e-67 259.6 264 58.0
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.5e-66 257.3 267 55.8
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 3.2e-66 256.1 267 57.7
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 2.7e-65 253.1 264 55.7
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 4.7e-65 252.3 263 53.2
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.4e-64 250.8 235 64.3
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 8.8e-64 248.1 265 55.5
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 1.5e-63 247.3 263 51.7
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 2.6e-63 246.5 271 57.9
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 3.4e-63 246.1 265 55.1
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 3.7e-62 242.7 251 54.2
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.1e-61 239.6 266 53.4
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.1e-61 239.6 266 53.4
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.6e-60 237.3 265 55.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 2.7e-60 236.5 274 54.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 2.7e-60 236.5 266 53.0
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 4.5e-60 235.7 264 53.0
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 2.3e-59 233.4 265 53.6
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.9e-59 233.0 241 56.8
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 5.0e-59 232.3 272 56.6
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.6e-59 231.9 274 51.8
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.1e-58 231.1 265 50.6
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 2.5e-58 229.9 268 51.5
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 7.3e-58 228.4 241 54.8
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 7.3e-58 228.4 264 49.6
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 1.2e-57 227.6 276 51.1
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 6.1e-57 225.3 265 47.2
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 2.3e-56 223.4 273 59.7
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 6.8e-56 221.9 274 55.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 8.9e-56 221.5 274 57.7
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 3.4e-55 219.5 277 51.3
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 4.4e-55 219.2 271 57.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 7.5e-55 218.4 272 51.8
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 9.8e-55 218.0 270 56.7
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 9.8e-55 218.0 271 57.2
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 2.2e-54 216.9 264 51.1
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 5.4e-53 212.2 275 55.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 9.2e-53 211.5 273 55.3
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 9.2e-53 211.5 273 55.3
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 2.5e-50 203.4 269 48.7
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 2.5e-50 203.4 269 48.7
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 3.3e-50 203.0 274 45.3
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 1.6e-49 200.7 272 48.2
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 1.6e-49 200.7 272 48.2
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 3.6e-49 199.5 273 48.4
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.6e-44 184.1 279 47.0
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 2.0e-44 183.7 204 53.4
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 6.6e-43 178.7 210 54.3
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.1e-42 177.9 268 44.8
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 5.6e-42 175.6 164 69.5
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 9.5e-42 174.9 267 44.6
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 9.8e-39 164.9 168 54.8
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.4e-37 161.0 269 42.8
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 9.2e-37 158.3 257 44.0
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 7.3e-34 148.7 265 38.1
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 8.1e-33 145.2 241 41.1
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 1.1e-32 144.8 300 37.0
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 2.6e-31 140.2 287 37.6
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 8.6e-27 125.2 188 53.7
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 8.4e-22 108.6 248 35.1
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.5e-18 97.1 295 35.9
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-16 91.3 123 55.3
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 1.8e-16 90.9 204 37.7
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 6.9e-16 89.0 91 52.7
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 9.9e-15 85.1 257 30.4
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 5.4e-13 79.3 246 37.4
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 7.9e-12 75.5 71 60.6
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 1.3e-11 74.7 98 52.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 5.6e-10 69.3 119 42.0
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 6.2e-09 65.9 179 33.5
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 5.3e-08 62.8 51 60.8
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 3.4e-07 60.1 93 59.1
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 5.8e-07 59.3 50 62.0
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 9.9e-07 58.5 37 64.9
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.9e-06 57.0 45 60.0
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 6.4e-06 55.8 106 47.2


User provided reference genes

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