Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 6.3e-200 700.7 379 100.0
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 6.7e-117 424.9 382 65.7
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.5e-113 413.7 384 65.6
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.4e-98 363.2 378 61.6
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 7.2e-87 325.1 368 57.3
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 3.7e-83 312.8 372 57.0
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 1.8e-82 310.5 386 55.2
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 3.1e-82 309.7 394 52.8
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.0e-76 290.4 358 55.9
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 4.4e-76 289.3 337 54.9
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 9.7e-76 288.1 377 53.3
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 5.3e-74 282.3 334 56.6
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 7.0e-74 282.0 312 60.3
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 4.5e-73 279.3 381 50.1
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 1.0e-72 278.1 382 50.5
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 2.2e-72 276.9 323 57.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 8.5e-72 275.0 320 57.2
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 1.5e-71 274.2 329 55.6
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.9e-71 273.9 361 53.5
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 2.1e-70 270.4 383 49.6
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 2.3e-69 266.9 358 53.1
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 4.0e-69 266.2 353 53.3
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 4.0e-69 266.2 353 53.3
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.2e-68 264.6 365 50.1
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 5.7e-68 262.3 359 50.4
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.3e-67 261.2 349 53.0
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.3e-67 261.2 334 53.0
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.7e-67 260.8 386 50.0
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.8e-67 260.0 358 52.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.3e-67 258.8 370 49.7
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 3.1e-66 256.5 335 51.3
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 3.1e-66 256.5 343 52.5
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 7.0e-66 255.4 300 58.0
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 1.3e-64 251.1 298 55.4
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.1e-63 248.1 378 49.2
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 4.7e-62 242.7 377 49.6
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.0e-61 241.5 372 48.4
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 2.3e-61 240.4 408 47.5
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.2e-60 238.0 224 60.7
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 1.5e-60 237.7 348 48.9
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 2.2e-59 233.8 349 47.6
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 3.7e-59 233.0 375 46.7
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 4.9e-59 232.6 383 44.1
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 6.3e-59 232.3 356 47.2
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.4e-58 231.1 355 45.9
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.4e-58 231.1 370 48.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.8e-58 230.7 392 47.4
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 3.1e-58 229.9 353 50.4
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 1.2e-57 228.0 347 45.8
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 1.6e-57 227.6 382 44.5
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 3.5e-57 226.5 344 46.5
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 4.5e-57 226.1 342 49.4
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 2.9e-56 223.4 359 44.8
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 3.8e-56 223.0 352 48.0
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 6.6e-56 222.2 382 45.8
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 6.6e-56 222.2 361 45.4
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 2.5e-55 220.3 224 57.1
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 3.3e-55 219.9 255 52.5
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 7.3e-55 218.8 357 47.1
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 7.3e-55 218.8 357 47.1
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 7.3e-55 218.8 357 47.1
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 7.3e-55 218.8 350 45.7
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 1.2e-54 218.0 330 46.1
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.8e-54 216.9 347 47.6
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 6.1e-54 215.7 342 46.2
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 6.1e-54 215.7 360 44.7
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 1.0e-53 214.9 376 42.0
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 1.8e-53 214.2 361 46.0
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.8e-53 214.2 361 46.0
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.3e-53 213.8 378 45.0
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 5.2e-53 212.6 201 60.7
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 5.2e-53 212.6 193 63.7
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.5e-52 211.1 203 61.1
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 1.7e-51 207.6 211 59.7
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.1e-50 204.9 205 60.0
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.4e-50 204.5 340 43.2
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 3.2e-50 203.4 349 43.3
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 4.1e-50 203.0 312 49.0
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 4.1e-50 203.0 338 47.9
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 7.0e-50 202.2 350 47.4
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 7.0e-50 202.2 185 61.1
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 9.2e-50 201.8 347 46.7
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 3.5e-49 199.9 348 41.7
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 3.5e-49 199.9 357 45.7
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 4.6e-49 199.5 413 38.0
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 1.3e-48 198.0 199 59.8
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 1.1e-47 194.9 340 46.5
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 1.1e-47 194.9 350 42.9
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.5e-47 194.5 389 42.2
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.5e-47 194.5 278 46.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.3e-47 193.4 192 58.3
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 5.6e-47 192.6 214 55.6
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.6e-46 191.0 198 57.6
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.3e-45 187.2 384 40.4
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 6.8e-45 185.7 334 42.8
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 4.4e-44 183.0 205 51.2
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 9.8e-44 181.8 362 43.4
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.4e-42 176.0 258 50.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 2.3e-40 170.6 216 48.1
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 3.9e-40 169.9 201 49.3
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 7.3e-39 165.6 124 69.4
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.8e-37 161.0 162 59.3
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.8e-37 161.0 162 59.3
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 3.4e-36 156.8 214 46.7
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 5.4e-34 149.4 104 75.0
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 5.4e-34 149.4 124 66.9
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 3.5e-33 146.7 268 44.4
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 7.8e-33 145.6 117 72.6
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.4e-26 124.0 110 65.5
Haze_02796 Corylus avellana HOM05D006300 ORTHO05D007623 4.6e-25 119.8 76 86.8
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 3.0e-24 117.1 71 84.5
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 8.1e-22 109.0 175 46.9
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 1.8e-21 107.8 109 59.6
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 2.0e-20 104.4 212 37.3
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 2.6e-20 104.0 194 38.1
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 5.8e-20 102.8 213 41.8
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 5.8e-20 102.8 64 84.4
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 1.5e-15 88.2 73 65.8
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.1e-13 82.0 183 39.9
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 1.7e-11 74.7 102 49.0
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 2.9e-11 73.9 266 32.3
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 8.4e-11 72.4 225 29.8
arahy.Tifrunner.gnm1.ann1.GTSR33 Arachis hypogaea HOM05D006300 ORTHO05D007623 1.4e-10 71.6 106 50.0
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.9e-07 61.2 56 60.7
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 3.3e-07 60.5 40 75.0
TPR.G8429 Trifolium pratense HOM05D006300 ORTHO05D007623 1.6e-06 58.2 51 58.8


User provided reference genes

Program Settings