Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 4.5e-308 1060.8 718 100.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.9e-246 854.7 604 81.6
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 2.5e-245 852.4 742 79.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.7e-217 760.0 608 74.5
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 7.0e-216 754.6 743 72.4
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.2e-215 753.8 745 66.6
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 6.5e-214 748.0 745 66.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 5.7e-210 734.9 748 66.4
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.4e-208 729.6 747 65.6
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 7.0e-208 728.0 747 65.5
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.5e-207 725.3 747 64.7
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.7e-206 723.4 607 70.8
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 9.4e-205 717.6 750 65.9
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 1.2e-204 717.2 608 70.9
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 2.7e-204 716.1 540 70.2
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-202 709.9 749 64.4
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 4.8e-201 705.3 542 70.3
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.4e-200 703.0 592 70.9
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.1e-200 702.2 538 72.1
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 7.0e-200 701.4 539 70.7
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-199 699.9 608 70.6
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.1e-197 694.1 536 72.0
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.6e-196 690.3 537 69.6
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.0e-196 688.0 536 71.3
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.5e-194 683.7 520 71.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 1.5e-194 683.7 538 69.3
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 8.3e-193 677.9 531 68.2
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.9e-191 671.8 536 69.4
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.0e-190 671.0 519 70.5
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 8.6e-190 667.9 519 70.1
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.5e-189 664.5 607 69.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 3.6e-188 662.5 521 69.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.2e-187 658.7 534 67.6
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 7.5e-186 654.8 615 67.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 5.9e-183 645.2 534 69.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 5.0e-182 642.1 534 68.9
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 2.5e-181 639.8 532 67.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.6e-180 636.0 661 62.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.6e-180 636.0 534 67.0
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.8e-179 631.7 537 65.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-178 630.9 519 68.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.2e-177 626.7 529 67.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 7.0e-176 621.7 505 69.3
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.3e-174 617.5 514 68.7
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 3.9e-174 615.9 537 65.5
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.9e-174 615.9 495 69.3
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.9e-174 615.9 522 66.7
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 8.6e-174 614.8 537 66.1
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 2.5e-173 613.2 520 67.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 3.3e-173 612.8 545 64.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.6e-173 612.1 515 65.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 7.3e-173 611.7 517 66.7
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.1e-172 610.1 526 65.4
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.6e-172 609.4 539 64.9
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 8.1e-172 608.2 526 64.6
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 5.2e-171 605.5 593 66.6
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.2e-170 604.4 527 64.7
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.5e-170 604.0 526 65.4
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.6e-170 603.2 426 73.5
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.4e-170 602.4 449 70.2
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 9.8e-170 601.3 533 66.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.4e-168 597.4 634 61.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.4e-168 596.7 541 64.1
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.7e-166 590.5 550 63.1
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 7.3e-165 585.1 527 63.6
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 2.1e-164 583.6 516 66.9
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.1e-163 581.3 422 71.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 7.6e-162 575.1 619 58.6
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 2.2e-161 573.5 532 62.2
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 8.4e-161 571.6 545 60.7
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.9e-160 570.5 437 69.6
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.4e-160 570.1 403 73.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 9.2e-160 568.2 532 63.7
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.0e-158 563.1 490 65.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 8.6e-158 561.6 611 59.9
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 3.3e-157 559.7 515 61.4
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.6e-156 557.4 424 68.6
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 2.1e-156 557.0 484 64.0
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 4.7e-156 555.8 513 61.4
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 4.7e-156 555.8 442 66.7
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-154 550.8 394 71.8
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.4e-154 549.7 620 58.7
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 4.4e-154 549.3 535 59.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.9e-152 543.9 627 58.5
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.2e-152 543.1 526 57.2
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 4.2e-152 542.7 522 57.5
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 4.6e-151 539.3 586 59.2
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.1e-149 534.6 531 61.4
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 4.8e-148 529.3 538 57.8
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 8.4e-145 518.5 516 56.0
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 3.2e-144 516.5 532 56.6
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 9.3e-144 515.0 540 60.4
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 4.6e-143 512.7 467 62.3
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 7.9e-143 511.9 436 60.8
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.5e-141 507.7 511 59.5
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.3e-140 504.6 421 62.7
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.2e-138 498.0 541 52.9
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 2.0e-138 497.3 608 65.8
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.5e-138 496.1 447 59.3
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 2.1e-135 487.3 533 53.8
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.9e-135 485.3 509 58.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.9e-133 480.7 378 65.1
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 5.6e-133 479.2 519 54.3
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 2.0e-130 470.7 446 59.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 3.4e-130 469.9 493 55.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 8.4e-129 465.3 508 53.9
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.2e-127 461.5 455 57.6
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 7.9e-127 458.8 515 55.0
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 7.4e-125 452.2 372 64.0
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 4.6e-119 433.0 425 56.5
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.2e-112 409.8 438 55.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 9.7e-109 398.7 433 62.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.4e-107 394.8 352 61.6
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.1e-101 375.2 327 59.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 5.9e-98 362.8 425 49.2
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-94 351.7 344 56.1
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.0e-93 347.8 419 50.1
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 4.5e-90 336.7 419 47.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.9e-89 334.0 413 47.2
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 4.2e-88 330.1 380 49.7
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.1e-79 301.2 213 71.8
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.6e-77 294.3 333 57.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-75 288.5 210 70.0
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.4e-75 287.7 453 45.3
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.2e-74 285.4 281 63.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.2e-67 260.8 367 42.8
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 6.2e-63 246.5 373 44.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.6e-61 241.1 498 38.4
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 3.0e-57 227.6 189 62.4
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.2e-47 193.4 192 53.6
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.6e-45 188.0 201 52.2
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 2.8e-39 167.9 170 55.3
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.4e-38 165.6 304 36.5
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 4.6e-34 150.6 141 54.6
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.0e-33 149.4 141 54.6
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 7.6e-29 133.3 116 62.1
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 9.9e-29 132.9 191 53.9
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.7e-28 132.1 148 66.2
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-26 125.6 95 63.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 5.1e-25 120.6 120 57.5
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 9.9e-21 106.3 120 68.3
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.3e-17 95.1 141 46.1
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.3e-17 95.1 392 26.3
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 8.7e-17 93.2 294 27.6
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.4e-14 85.9 161 36.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 4.0e-14 84.3 126 44.4
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 5.8e-13 80.5 63 61.9
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 2.2e-12 78.6 106 43.4
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 8.7e-09 66.6 114 39.5
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.1e-08 66.2 44 77.3
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 4.8e-07 60.8 78 47.4
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.1e-06 59.7 67 49.3


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