Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.1e-246 854.7 453 100.0
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 4.4e-224 781.2 453 92.5
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 2.4e-190 669.1 450 80.0
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 4.3e-187 658.3 450 72.4
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 4.3e-179 631.7 446 70.9
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 4.7e-178 628.2 450 77.1
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 1.2e-173 613.6 447 67.3
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.1e-173 612.8 446 72.9
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 6.6e-172 607.8 451 73.4
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.5e-171 606.7 454 67.0
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.4e-169 600.1 440 68.2
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.1e-169 599.0 445 66.3
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.1e-169 599.0 445 66.3
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.2e-168 597.0 449 66.8
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 3.4e-168 595.5 453 70.0
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 2.2e-167 592.8 458 65.5
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 2.1e-165 586.3 451 66.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 3.9e-164 582.0 448 70.3
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.3e-162 577.0 448 68.8
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 3.7e-162 575.5 452 64.2
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 1.8e-161 573.2 447 63.8
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 7.6e-160 567.8 445 62.7
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.3e-159 567.0 447 63.1
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 3.8e-159 565.5 465 67.5
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.8e-159 565.5 447 63.3
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.9e-158 563.1 452 67.0
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.4e-158 562.8 451 63.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 2.4e-158 562.8 437 67.5
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 7.9e-157 557.8 471 61.4
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 6.2e-154 548.1 450 66.7
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 6.2e-154 548.1 452 66.2
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.4e-153 546.2 448 59.4
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 3.1e-153 545.8 451 66.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 4.0e-153 545.4 433 61.7
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 5.3e-153 545.0 448 65.4
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.5e-150 536.2 447 61.7
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.5e-150 535.0 457 65.6
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 2.1e-149 533.1 426 67.8
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 3.5e-149 532.3 458 65.7
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 7.9e-149 531.2 458 65.5
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.9e-148 528.9 432 65.0
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.9e-148 528.9 454 60.1
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 1.1e-147 527.3 453 61.8
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.5e-147 526.9 516 52.9
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 7.4e-147 524.6 448 64.3
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.2e-146 523.1 458 64.8
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 2.8e-146 522.7 457 56.7
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 5.3e-145 518.5 448 64.3
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 6.9e-145 518.1 450 63.6
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 6.9e-145 518.1 441 63.5
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.6e-144 516.2 449 65.7
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.4e-144 515.8 455 58.5
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 7.6e-144 514.6 446 63.2
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 2.9e-143 512.7 450 62.4
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 3.8e-143 512.3 450 61.8
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 8.5e-143 511.1 455 58.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.8e-140 503.4 421 60.3
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 3.9e-140 502.3 451 62.7
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.5e-139 499.6 365 70.7
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.3e-138 497.3 456 62.1
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 6.3e-138 495.0 449 56.1
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 6.9e-137 491.5 447 61.5
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.8e-135 485.7 454 55.1
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.1e-134 484.2 451 59.0
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 5.5e-134 481.9 455 60.9
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 7.2e-134 481.5 466 59.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 7.2e-134 481.5 446 61.2
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 4.7e-133 478.8 385 68.3
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.8e-132 476.9 401 65.6
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 5.1e-132 475.3 451 57.9
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 5.1e-132 475.3 452 60.4
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 1.1e-131 474.2 451 58.8
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.5e-131 473.8 379 67.3
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.0e-131 473.4 451 57.6
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.3e-130 470.7 451 59.4
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 1.7e-130 470.3 452 59.1
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.4e-129 467.2 444 56.1
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.8e-129 466.8 451 56.8
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 5.3e-129 465.3 453 56.1
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.6e-128 463.0 452 55.5
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 2.6e-128 463.0 452 55.5
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 2.6e-128 463.0 559 46.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 2.6e-128 463.0 453 58.9
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.6e-128 463.0 440 60.0
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.0e-127 461.1 453 56.7
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 6.5e-127 458.4 452 58.8
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 5.5e-126 455.3 444 55.4
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.7e-125 453.0 452 58.0
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.7e-125 452.2 363 60.9
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.6e-117 426.0 339 63.4
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 2.0e-115 420.2 452 55.8
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 4.1e-113 412.5 457 54.9
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.0e-111 407.9 315 65.4
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 6.5e-111 405.2 423 54.8
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 1.5e-110 404.1 339 59.3
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 5.5e-110 402.1 450 50.7
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 5.0e-103 379.0 292 64.0
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.7e-101 372.5 323 66.6
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 2.9e-95 353.2 264 66.3
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.7e-88 330.1 287 60.6
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 7.8e-88 328.6 343 57.4
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 6.6e-87 325.5 267 71.9
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 2.8e-85 320.1 338 51.2
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 4.4e-67 259.6 251 56.2
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 7.8e-64 248.8 418 40.4
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 4.0e-60 236.5 430 38.8
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.6e-56 223.0 173 65.3
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 4.3e-54 216.5 405 37.5
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.6e-51 207.2 214 63.1
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.4e-50 202.6 208 54.8
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 4.2e-49 199.9 406 34.7
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 9.3e-49 198.7 428 33.6
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.1e-48 197.6 405 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 2.5e-46 190.7 417 36.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 3.7e-45 186.8 230 42.6
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 3.8e-42 176.8 114 68.4
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 4.2e-41 173.3 147 57.1
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.6e-40 171.4 113 70.8
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.0e-39 168.7 216 44.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-35 155.2 115 67.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 4.9e-34 149.8 100 68.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 8.7e-31 139.0 111 62.2
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 7.4e-30 136.0 149 49.7
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 9.7e-30 135.6 207 42.0
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 6.3e-29 132.9 100 64.0
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 8.5e-26 122.5 89 64.0
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.6e-24 118.2 110 56.4
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 1.9e-17 94.7 56 78.6
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 2.6e-14 84.3 58 67.2
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 5.3e-12 76.6 66 60.6
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 9.1e-12 75.9 55 61.8
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.0e-10 72.4 58 62.1
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.9e-09 68.2 38 81.6
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 2.5e-09 67.8 38 81.6
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 9.4e-09 65.9 182 28.6
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 6.1e-08 63.2 40 75.0
MBI10_g15884_MAGBIO Magnolia biondii HOM05D045841 ORTHO05D006945 1.4e-07 62.0 98 39.8
Lsat_1_v5_gn_1_127740 Lactuca sativa HOM05D001044 ORTHO05D008486 4.4e-06 57.0 39 69.2
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 4.4e-06 57.0 45 60.0


User provided reference genes

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