Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 5.1e-272 940.6 535 100.0
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 5.3e-245 850.9 472 97.2
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.2e-205 718.8 475 80.2
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.0e-203 713.8 475 83.8
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.2e-193 680.2 475 78.7
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.4e-189 666.8 475 75.8
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 5.1e-179 631.7 475 70.5
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.8e-176 623.2 475 68.2
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.5e-170 603.6 479 68.1
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 9.6e-170 600.9 477 70.2
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 7.6e-167 591.3 478 65.9
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 4.9e-166 588.6 468 67.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.4e-166 587.8 476 69.3
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 2.4e-165 586.3 479 65.8
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.4e-165 585.1 476 69.3
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 7.1e-165 584.7 476 69.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.6e-161 573.5 484 65.3
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.6e-161 573.5 483 65.6
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.4e-160 569.7 479 68.3
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 2.6e-159 566.2 477 64.2
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.9e-158 562.0 478 62.3
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 6.4e-158 561.6 486 67.9
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.5e-157 558.5 478 61.9
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 7.1e-157 558.1 482 66.0
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 6.0e-156 555.1 475 61.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 2.3e-155 553.1 476 63.0
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.3e-155 553.1 478 61.7
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.9e-155 552.4 475 60.8
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 5.1e-155 552.0 479 62.6
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.8e-152 543.5 477 62.5
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.4e-149 533.9 475 60.4
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 2.3e-147 526.6 475 61.9
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.3e-145 520.8 489 59.1
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.3e-145 520.8 489 59.1
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.2e-141 505.8 484 62.2
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 4.2e-141 505.8 480 60.6
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 5.1e-139 498.8 475 57.3
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.1e-139 498.8 363 72.7
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 3.7e-137 492.7 475 57.1
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.3e-134 484.2 486 60.5
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 2.1e-132 476.9 475 56.2
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.6e-132 476.1 472 62.3
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 4.7e-132 475.7 477 61.8
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.0e-130 470.3 481 57.0
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 2.0e-130 470.3 476 60.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 3.3e-130 469.5 478 60.0
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 9.7e-130 468.0 480 61.5
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 2.8e-129 466.5 477 56.6
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 6.3e-129 465.3 475 54.7
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 8.2e-129 464.9 480 59.8
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 1.4e-128 464.2 482 59.1
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.1e-128 462.6 423 60.3
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.0e-127 460.3 475 54.7
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 3.4e-127 459.5 476 55.3
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 7.7e-127 458.4 484 56.6
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 3.8e-126 456.1 475 56.6
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 5.0e-126 455.7 449 57.7
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 5.5e-125 452.2 477 57.7
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 5.2e-123 445.7 475 58.9
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 6.7e-123 445.3 479 54.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.5e-122 444.1 496 57.3
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 6.3e-121 438.7 483 53.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.3e-120 435.6 487 53.2
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.2e-119 434.5 481 53.6
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.9e-117 427.2 475 50.7
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.3e-115 420.2 478 51.3
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.7e-115 418.7 478 51.0
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.0e-114 417.2 479 55.5
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.1e-112 411.4 493 51.3
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.2e-111 407.9 480 56.0
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 5.9e-111 405.6 482 51.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 5.9e-111 405.6 479 50.3
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 8.5e-110 401.7 490 50.6
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-109 400.2 478 54.2
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 3.2e-109 399.8 486 48.6
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 9.4e-109 398.3 486 53.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.2e-108 397.9 470 50.2
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-108 397.5 476 54.8
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 8.0e-108 395.2 492 49.0
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.0e-107 394.8 481 50.5
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-107 394.8 480 54.2
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-107 394.4 404 55.4
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.3e-107 393.7 292 69.2
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.2e-106 391.3 481 54.3
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 4.4e-106 389.4 484 51.4
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 4.4e-106 389.4 484 51.4
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.8e-105 386.0 478 54.2
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 1.1e-104 384.8 305 62.6
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 9.1e-104 381.7 487 48.7
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.7e-103 380.2 479 48.4
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 4.5e-103 379.4 495 48.3
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.0e-102 378.3 479 47.4
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.9e-102 376.7 333 60.4
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.5e-101 373.6 480 46.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 4.2e-101 372.9 478 51.5
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.8e-100 370.2 333 59.5
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.0e-99 366.3 476 51.1
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.6e-98 363.6 287 73.9
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.4e-98 362.8 491 46.8
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 5.7e-98 362.5 503 44.3
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.5e-98 362.1 428 52.6
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 9.8e-98 361.7 497 46.1
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.3e-97 361.3 417 52.0
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.0e-95 354.0 481 50.7
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.0e-95 354.0 481 50.7
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-93 348.2 477 49.7
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.6e-92 344.4 500 44.6
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.0e-91 339.7 354 58.8
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 2.0e-90 337.4 504 43.7
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 5.8e-90 335.9 492 46.3
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.7e-89 333.2 286 68.2
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 4.9e-89 332.8 478 43.1
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 8.3e-89 332.0 289 67.1
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.4e-88 330.5 299 62.5
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-87 327.4 472 51.5
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.6e-87 326.2 341 54.3
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.9e-86 323.2 486 49.4
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 3.3e-85 320.1 485 43.9
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.1e-83 313.5 481 47.4
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 9.8e-82 308.5 416 47.4
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.2e-80 303.5 478 46.0
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.1e-77 295.0 486 44.0
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.8e-75 287.7 237 71.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-73 281.6 299 52.8
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.4e-72 276.2 260 58.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.3e-70 271.6 333 51.7
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.9e-64 251.1 235 57.9
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 3.2e-64 250.4 470 38.7
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 7.6e-58 229.2 304 50.3
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 2.4e-56 224.2 467 41.1
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.1e-52 209.1 238 50.0
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 8.7e-46 189.1 328 43.0
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.3e-45 186.8 156 64.7
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-44 184.9 176 57.4
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.5e-42 176.8 164 71.3
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.4e-41 172.6 163 67.5
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.5e-40 169.9 174 54.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.5e-37 161.0 233 44.6
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.6e-37 159.8 278 42.4
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.2e-36 156.4 153 57.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.9e-35 152.9 146 56.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 9.3e-32 142.5 104 68.3
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 1.9e-29 134.8 122 54.1
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 2.8e-28 131.0 207 45.9
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-27 128.6 87 74.7
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 2.0e-26 124.8 147 44.2
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.0e-22 110.9 120 45.8
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 6.7e-22 109.8 72 76.4
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.1e-19 102.4 79 65.8
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-17 95.5 72 66.7
TAR314G0006 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-12 78.6 89 44.9
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 2.2e-09 68.2 310 27.1
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 8.5e-09 66.2 204 31.4
Duzib205G0795 Durio zibethinus HOM05D002503 ORTHO05D002810 8.5e-09 66.2 406 28.1
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 1.9e-08 65.1 229 27.1
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 7.2e-08 63.2 231 25.5
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 7.2e-08 63.2 233 27.5
QL01p025894 Quercus lobata HOM05D002125 ORTHO05D002105 7.2e-08 63.2 228 27.2
MELO3C025685.2 Cucumis melo HOM05D002125 ORTHO05D002105 1.6e-07 62.0 183 33.3
CsaV3_6G018970 Cucumis sativus L. HOM05D002125 ORTHO05D002105 2.1e-07 61.6 183 33.3
Medtr5g430490 Medicago truncatula HOM05D001219 ORTHO05D001017 2.1e-07 61.6 377 27.9
Ca_00594_v3 Cicer arietinum L. HOM05D002762 ORTHO05D004643 2.7e-07 61.2 273 27.8
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 3.6e-07 60.8 221 26.2
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 6.1e-07 60.1 233 26.2
Sp7g13700 Schrenkiella parvula HOM05D002762 ORTHO05D004643 6.1e-07 60.1 283 25.4
GSVIVG01030257001 Vitis vinifera HOM05D002125 ORTHO05D002105 1.0e-06 59.3 228 27.2
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 1.4e-06 58.9 234 28.6
VMungo0540G1770 Vigna mungo HOM05D002762 ORTHO05D004643 1.4e-06 58.9 287 26.5
Phvul.006G157700 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 1.8e-06 58.5 287 26.5
Ca_04901_v3 Cicer arietinum L. HOM05D001219 ORTHO05D001017 2.3e-06 58.2 434 24.9
Prupe.6G286100 Prunus persica HOM05D002125 ORTHO05D002105 2.3e-06 58.2 225 26.7
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 3.0e-06 57.8 235 28.1
Duzib084G1134 Durio zibethinus HOM05D002503 ORTHO05D002810 5.2e-06 57.0 407 27.0
Lj1A978T43 Lonicera japonica HOM05D002503 ORTHO05D002810 5.2e-06 57.0 406 26.8
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 6.7e-06 56.6 235 27.7
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 6.7e-06 56.6 235 27.7
COL.COLO4_12472 Corchorus olitorius HOM05D002503 ORTHO05D002810 6.7e-06 56.6 428 25.0
Nn2g11037 Nelumbo nucifera HOM05D002125 ORTHO05D002105 6.7e-06 56.6 237 26.2
Psat1g185320 Pisum sativum HOM05D002762 ORTHO05D004643 6.7e-06 56.6 277 28.2
TPR.G19224 Trifolium pratense HOM05D001219 ORTHO05D001017 6.7e-06 56.6 368 26.6
BraA03t14008Z Brassica rapa HOM05D002762 ORTHO05D004643 8.8e-06 56.2 309 25.6
Manes.03G187500 Manihot esculenta HOM05D002762 ORTHO05D004643 8.8e-06 56.2 271 27.3


User provided reference genes

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