Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 0.0e+00 1711.0 915 100.0
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 0.0e+00 1320.8 936 77.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 0.0e+00 1268.4 998 71.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 0.0e+00 1085.9 950 68.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.4e-308 1061.6 952 65.3
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.7e-304 1049.3 952 64.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 8.6e-304 1047.0 948 64.9
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 4.3e-303 1044.6 952 64.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.0e-301 1038.1 947 65.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 4.2e-298 1028.1 944 61.9
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 1.0e-296 1023.5 965 60.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-295 1020.0 952 64.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.4e-292 1008.4 908 62.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-291 1006.1 949 61.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.4e-290 1002.3 950 62.9
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.7e-289 998.8 950 62.7
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.1e-288 994.6 950 63.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.6e-286 989.6 926 61.1
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.4e-285 986.5 926 61.0
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.4e-285 985.7 944 62.5
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.8e-284 981.1 949 62.5
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 8.4e-283 977.2 943 62.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 9.3e-282 973.8 950 61.3
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.1e-280 968.0 951 62.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-279 966.8 951 62.3
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-279 966.8 951 62.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.4e-277 959.9 948 61.6
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 3.1e-277 958.7 938 60.2
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.9e-273 944.1 955 59.8
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 5.7e-271 937.9 955 60.6
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.7e-271 937.9 957 59.6
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-269 932.9 952 59.7
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.0e-268 929.5 1003 55.7
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 7.6e-268 927.5 955 57.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.4e-266 923.3 947 59.7
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.2e-266 921.8 944 60.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 4.1e-261 905.2 955 57.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 5.0e-259 898.3 951 57.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 5.5e-258 894.8 947 58.2
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.6e-257 892.1 948 57.0
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.1e-253 878.6 951 56.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 7.9e-249 864.4 916 57.0
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 8.8e-248 860.9 948 54.4
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.2e-244 850.5 934 53.7
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.1e-242 844.0 678 69.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.5e-239 833.6 905 54.8
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.0e-239 833.2 965 54.3
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-239 832.8 935 56.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 4.4e-239 832.0 952 53.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.2e-235 819.7 975 53.2
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 6.5e-235 818.1 922 53.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-234 817.0 905 55.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 7.2e-234 814.7 951 52.2
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-232 810.4 784 61.5
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.8e-232 808.1 983 53.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-231 807.0 900 55.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.7e-230 803.5 905 55.4
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.3e-230 801.2 930 56.0
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.2e-228 797.3 945 51.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.1e-226 790.8 888 53.9
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.6e-225 786.9 955 52.8
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 6.1e-225 785.0 929 54.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.1e-225 785.0 911 52.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 5.4e-221 771.9 892 52.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-220 770.8 903 54.8
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.6e-220 770.4 943 51.9
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 2.7e-220 769.6 1020 49.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.8e-220 768.1 923 54.2
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.9e-219 766.1 983 50.5
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.6e-217 759.2 944 51.3
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.0e-215 753.4 917 51.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.5e-210 734.6 495 80.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.7e-209 732.3 883 51.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.3e-208 729.9 860 53.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.5e-207 724.9 880 51.6
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.2e-206 723.4 945 48.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 8.3e-206 721.5 901 50.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.9e-205 720.3 939 49.1
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.9e-205 720.3 935 50.9
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.2e-205 718.0 970 46.7
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-203 714.1 880 51.1
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 6.2e-201 705.3 928 50.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.4e-200 704.1 875 51.0
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.9e-198 696.4 906 49.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.9e-197 693.7 906 49.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.6e-196 690.6 957 48.7
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.6e-196 689.1 981 46.4
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.0e-195 686.4 862 52.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.9e-195 686.0 912 49.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 9.5e-194 681.4 900 48.3
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.1e-193 680.2 680 59.3
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.1e-193 678.3 935 48.2
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 2.2e-190 670.2 619 64.5
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.1e-188 663.7 886 47.9
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 3.5e-188 662.9 916 47.8
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.9e-186 657.1 933 46.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.1e-185 653.7 910 46.3
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.8e-182 642.9 914 47.3
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 2.3e-179 633.6 939 46.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.3e-178 629.8 903 45.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.1e-176 623.2 886 48.4
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.4e-173 614.4 920 46.0
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.2e-173 612.8 902 44.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.6e-170 602.4 870 46.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.0e-167 594.0 863 48.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.1e-165 588.2 925 45.2
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.2e-165 586.6 852 46.5
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.2e-165 586.3 864 47.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.7e-164 583.6 864 45.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.6e-162 575.9 703 52.3
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.4e-160 570.5 886 44.0
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.4e-160 570.5 918 43.8
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.0e-160 569.7 913 43.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.3e-160 569.3 870 44.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 7.6e-159 565.5 899 44.3
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.5e-157 559.3 635 56.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 7.1e-157 558.9 696 52.3
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 5.3e-152 542.7 886 44.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.7e-151 538.9 894 42.3
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 8.5e-150 535.4 868 45.3
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.2e-149 533.1 696 48.9
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.7e-147 525.8 962 42.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 8.8e-147 525.4 961 42.6
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 3.3e-146 523.5 961 42.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-145 521.5 919 43.5
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.2e-145 520.8 929 42.3
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 4.8e-145 519.6 922 43.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 6.3e-145 519.2 917 43.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.1e-144 516.9 953 41.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.2e-143 515.0 953 42.0
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-143 514.6 917 43.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.5e-143 514.6 917 43.1
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.2e-142 510.8 930 42.2
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 5.0e-142 509.6 918 42.0
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 4.7e-140 503.1 906 41.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 3.3e-138 496.9 831 44.0
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-127 461.5 471 57.7
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.0e-123 447.2 437 61.1
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.5e-122 444.9 987 38.1
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.1e-120 438.7 820 39.5
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.7e-113 413.7 821 42.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.8e-113 413.3 867 38.8
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.0e-112 409.5 902 35.5
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.2e-109 400.2 834 37.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 3.5e-103 380.6 619 43.5
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 7.8e-103 379.4 456 57.0
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-101 375.6 291 68.0
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 7.3e-101 372.9 540 43.9
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-98 364.8 338 61.2
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.4e-83 315.5 996 33.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.3e-81 306.2 920 33.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 4.1e-80 303.9 388 48.7
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-75 288.9 228 68.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.9e-69 268.5 420 49.5
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.4e-67 261.5 778 32.5
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-65 254.6 783 32.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-63 247.7 720 33.8
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.8e-58 230.3 278 53.6
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.1e-55 221.9 265 51.7
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.0e-54 219.5 118 89.0
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.5e-53 214.9 807 32.8
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 3.7e-52 211.1 275 46.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-47 196.1 194 58.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 5.1e-46 190.7 351 40.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.7e-45 187.2 413 32.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.4e-45 186.8 262 53.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 9.6e-45 186.4 98 89.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 4.5e-42 177.6 273 42.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.7e-34 150.2 537 32.6
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 8.2e-28 130.2 176 48.9
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.0e-22 111.7 117 56.4
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.2e-20 105.5 98 73.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.2e-16 91.7 192 34.4
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-14 86.7 157 37.6
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-13 83.2 99 44.4
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.7e-13 80.9 137 36.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-12 78.6 44 77.3
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 6.5e-09 67.4 104 41.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.1e-08 66.6 132 32.6
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.9e-08 65.9 119 42.0
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 6.1e-07 60.8 100 38.0


User provided reference genes

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