Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 1.7e-207 725.7 356 100.0
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 5.4e-153 544.7 360 81.1
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 6.8e-87 325.1 365 55.9
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 4.3e-65 252.7 307 51.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.1e-57 228.0 373 41.3
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 1.1e-55 221.5 375 42.7
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.8e-55 220.7 376 42.8
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.1e-52 208.8 377 38.7
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 1.3e-50 204.5 364 40.1
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 1.7e-50 204.1 341 43.1
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.3e-50 203.8 247 49.8
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.9e-50 203.0 364 40.1
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 3.3e-49 199.9 246 49.6
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 2.8e-48 196.8 310 42.3
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.3e-47 193.7 343 41.1
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 3.7e-45 186.4 365 37.5
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 4.1e-44 183.0 358 39.4
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 4.1e-44 183.0 357 38.9
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 9.2e-44 181.8 369 36.6
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.5e-43 179.9 205 50.7
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.7e-42 177.6 354 38.7
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 5.1e-42 176.0 372 38.2
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.3e-41 172.9 333 38.4
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 2.1e-40 170.6 207 48.8
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.1e-40 170.6 249 45.4
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 8.1e-40 168.7 348 39.4
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.1e-39 166.8 336 38.1
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 3.1e-39 166.8 329 39.5
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 8.9e-39 165.2 206 48.5
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.2e-38 164.9 520 29.2
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 1.5e-38 164.5 385 35.3
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 5.8e-38 162.5 171 55.0
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 5.8e-38 162.5 181 53.6
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.7e-37 161.0 379 35.4
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.4e-36 157.1 324 39.5
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.2e-36 156.4 174 54.0
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 7.1e-36 155.6 344 37.2
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 9.3e-36 155.2 354 38.4
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 9.3e-36 155.2 283 41.7
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 1.6e-35 154.5 256 40.2
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 2.3e-34 150.6 218 47.2
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 1.1e-33 148.3 163 54.6
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.9e-33 147.5 169 52.1
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.5e-33 147.1 168 55.4
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 4.3e-33 146.4 284 40.1
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 3.6e-32 143.3 163 52.8
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 8.1e-32 142.1 226 42.0
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.1e-31 141.7 331 38.7
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 1.2e-30 138.3 386 33.2
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 3.4e-30 136.7 165 50.3
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 4.5e-30 136.3 154 50.6
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 5.8e-30 136.0 154 50.6
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.8e-30 136.0 166 49.4
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 1.7e-29 134.4 270 37.8
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 2.2e-29 134.0 179 50.8
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 6.4e-29 132.5 159 48.4
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 6.4e-29 132.5 193 43.5
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.4e-29 132.1 135 56.3
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 5.4e-28 129.4 145 53.8
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 5.4e-28 129.4 161 47.2
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 7.1e-28 129.0 154 49.4
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 7.1e-28 129.0 204 44.6
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 9.3e-28 128.6 161 50.9
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 9.3e-28 128.6 201 40.3
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 2.1e-27 127.5 156 46.8
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 2.1e-27 127.5 186 44.1
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 3.5e-27 126.7 184 42.4
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 6.0e-27 125.9 157 47.8
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.0e-26 125.2 146 50.0
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 3.0e-26 123.6 189 40.7
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 3.9e-26 123.2 415 32.5
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 5.1e-26 122.9 147 49.7
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.7e-26 122.5 156 46.8
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 8.7e-26 122.1 172 45.3
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 8.7e-26 122.1 172 45.9
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.5e-25 121.3 161 48.4
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.9e-25 120.9 161 48.4
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.5e-25 120.6 215 39.1
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 2.5e-25 120.6 192 41.1
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 3.3e-25 120.2 192 40.6
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 3.3e-25 120.2 145 47.6
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 7.4e-25 119.0 146 48.6
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 7.4e-25 119.0 153 45.8
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 1.6e-24 117.9 166 41.6
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 4.8e-24 116.3 150 48.0
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 8.1e-24 115.5 203 39.4
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 1.4e-23 114.8 281 32.4
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.4e-23 114.8 157 46.5
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 1.8e-23 114.4 166 41.0
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 2.4e-23 114.0 190 39.5
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 3.4e-22 110.2 186 38.2
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 7.6e-22 109.0 179 41.9
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 9.9e-22 108.6 168 45.2
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 1.7e-21 107.8 160 45.0
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 1.7e-21 107.8 160 45.0
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 1.4e-20 104.8 259 34.4
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 2.4e-20 104.0 151 44.4
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 3.2e-20 103.6 165 42.4
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 4.2e-20 103.2 148 45.3
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 2.7e-19 100.5 133 47.4
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.7e-19 100.5 147 44.9
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 2.7e-19 100.5 252 34.5
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 2.7e-19 100.5 156 38.5
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 3.5e-19 100.1 134 44.0
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 6.0e-19 99.4 176 40.3
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 6.0e-19 99.4 176 40.3
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 7.9e-19 99.0 132 44.7
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 1.0e-18 98.6 176 40.9
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 1.3e-18 98.2 141 44.7
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 1.8e-18 97.8 160 42.5
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 1.8e-18 97.8 299 30.1
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.8e-18 97.8 132 43.9
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 2.3e-18 97.4 202 36.6
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.3e-18 97.4 136 41.2
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.0e-18 97.1 136 42.6
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.9e-18 96.7 136 41.9
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 3.9e-18 96.7 127 43.3
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.5e-17 94.7 155 41.3
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 1.9e-17 94.4 170 39.4
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 2.5e-17 94.0 347 28.8
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.5e-17 94.0 140 42.9
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 6.2e-16 89.4 127 40.9
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 3.1e-15 87.0 131 40.5
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 1.5e-14 84.7 61 63.9
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 2.6e-14 84.0 153 36.6
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 3.4e-14 83.6 76 56.6
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 7.6e-14 82.4 141 39.0
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.2e-13 80.9 289 28.4
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 3.8e-13 80.1 72 58.3
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 4.9e-13 79.7 140 41.4
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.1e-12 78.6 149 36.2
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.9e-12 77.8 130 36.9
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 4.6e-11 73.2 145 33.8
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.3e-09 67.0 140 33.6
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 4.3e-09 66.6 142 32.4
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 5.7e-09 66.2 134 35.8
Lsat_1_v5_gn_4_109841 Lactuca sativa HOM05D005220 ORTHO05D006082 9.6e-09 65.5 179 32.4
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.3e-08 65.1 144 34.0
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.3e-08 65.1 176 29.5
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.1e-08 64.3 143 31.5
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 2.1e-08 64.3 152 31.6
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 2.1e-08 64.3 152 32.2
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 2.1e-08 64.3 172 27.3
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 2.8e-08 63.9 178 27.5
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.7e-08 63.5 136 34.6
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 6.3e-08 62.8 135 31.1
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 6.3e-08 62.8 135 31.1
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 8.2e-08 62.4 157 29.9
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 8.2e-08 62.4 130 29.2
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 1.1e-07 62.0 139 32.4
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.4e-07 61.6 147 29.3
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.8e-07 61.2 200 26.0
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.4e-07 60.8 133 33.8
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 4.1e-07 60.1 52 48.1
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 5.3e-07 59.7 139 33.1
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 6.9e-07 59.3 136 29.4
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 9.0e-07 58.9 192 28.6
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.2e-06 58.5 124 32.3
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.2e-06 58.5 187 26.7
THA.LOC104818515 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.2e-06 58.5 137 32.8
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.5e-06 58.2 191 26.2
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 1.5e-06 58.2 131 29.8
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 1.5e-06 58.2 198 29.3
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.0e-06 57.8 162 27.8
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 2.0e-06 57.8 198 29.3
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.6e-06 57.4 149 27.5
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 2.6e-06 57.4 198 28.3
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 3.4e-06 57.0 178 25.3
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 3.4e-06 57.0 137 30.7
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 5.9e-06 56.2 187 25.7
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 5.9e-06 56.2 179 25.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 7.6e-06 55.8 179 25.1
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 7.6e-06 55.8 189 25.9
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 7.6e-06 55.8 198 26.3
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.0e-05 55.5 154 27.3
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.0e-05 55.5 190 30.0


User provided reference genes

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