Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 6.8e-198 694.1 438 100.0
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 5.8e-181 637.9 442 92.5
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 7.6e-173 610.9 446 86.8
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 1.6e-154 550.1 525 72.0
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 5.1e-153 545.0 442 81.4
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 8.7e-153 544.3 440 67.0
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 1.3e-151 540.4 461 77.2
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 6.2e-151 538.1 448 78.8
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 6.2e-151 538.1 440 76.1
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 3.1e-150 535.8 439 80.9
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 5.8e-149 531.6 439 78.8
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 7.6e-149 531.2 441 70.3
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 2.2e-148 529.6 449 75.7
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-147 527.3 449 76.8
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 4.2e-147 525.4 442 77.8
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-146 523.9 443 73.1
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 1.2e-146 523.9 452 73.5
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 1.6e-146 523.5 449 78.2
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 3.5e-146 522.3 438 77.9
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 5.1e-145 518.5 443 81.3
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 5.1e-145 518.5 441 79.1
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 4.3e-144 515.4 444 74.3
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 7.4e-144 514.6 453 75.9
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 9.7e-144 514.2 440 68.6
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.2e-143 513.1 448 70.8
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 2.8e-143 512.7 422 81.0
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.7e-143 512.3 486 71.4
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 4.1e-142 508.8 451 77.4
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 9.0e-142 507.7 445 78.4
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 1.2e-141 507.3 456 76.1
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 2.6e-141 506.1 442 75.1
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 4.5e-141 505.4 441 70.3
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 7.7e-141 504.6 439 70.8
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 2.9e-140 502.7 432 75.9
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.1e-139 500.7 438 76.3
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 2.5e-139 499.6 455 74.7
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 3.2e-139 499.2 444 79.3
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 9.4e-139 497.7 495 72.9
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.7e-138 496.1 439 77.7
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 4.6e-138 495.4 439 77.4
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 4.6e-138 495.4 438 75.6
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.5e-136 490.3 439 77.2
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 3.3e-136 489.2 474 74.7
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 5.7e-136 488.4 458 70.7
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.4e-136 488.0 428 75.5
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 7.4e-136 488.0 438 74.4
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 2.2e-135 486.5 448 62.1
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.8e-135 486.1 430 75.8
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 8.2e-135 484.6 446 68.2
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-134 483.8 430 74.7
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.3e-134 481.9 432 74.3
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 5.3e-134 481.9 437 77.6
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.5e-132 474.9 419 69.7
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 1.4e-131 473.8 431 67.7
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.5e-131 471.9 266 86.5
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 4.7e-130 468.8 437 69.1
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 4.7e-130 468.8 436 72.0
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 1.4e-129 467.2 433 73.0
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 5.1e-129 465.3 438 72.8
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 6.7e-129 464.9 435 75.4
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 1.3e-127 460.7 477 63.3
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 1.7e-127 460.3 446 71.1
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 2.8e-127 459.5 420 63.1
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 8.2e-127 458.0 411 75.4
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 3.1e-126 456.1 446 62.1
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 9.1e-126 454.5 437 71.4
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.5e-125 453.8 448 69.6
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 2.0e-125 453.4 437 70.7
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 1.7e-124 450.3 440 70.0
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 2.9e-124 449.5 437 70.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 5.0e-124 448.7 455 68.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 6.5e-124 448.4 444 66.9
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 8.5e-124 448.0 439 69.9
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 7.2e-123 444.9 419 57.0
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 1.4e-121 440.7 431 55.9
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 1.8e-121 440.3 509 61.1
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 5.2e-121 438.7 259 82.6
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 3.3e-120 436.0 439 64.2
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 5.7e-120 435.3 428 60.5
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.3e-119 434.1 507 58.4
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 1.7e-119 433.7 437 59.0
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 3.7e-119 432.6 488 52.9
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 3.1e-118 429.5 438 66.0
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 9.1e-118 427.9 438 66.9
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 2.6e-117 426.4 244 84.4
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 4.5e-117 425.6 513 57.7
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 5.9e-117 425.2 440 63.9
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 1.0e-116 424.5 446 66.6
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 5.0e-116 422.2 440 63.9
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 8.5e-116 421.4 438 67.6
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 1.5e-115 420.6 442 64.7
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.9e-115 420.2 452 55.3
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 2.5e-115 419.9 439 67.2
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 3.0e-113 412.9 437 59.7
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.3e-111 407.5 440 62.3
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 2.2e-111 406.8 442 63.1
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 4.8e-111 405.6 240 79.6
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.7e-108 397.1 240 77.9
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-107 394.4 225 78.2
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.1e-107 394.4 225 78.2
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 4.2e-107 392.5 227 80.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 5.5e-107 392.1 386 73.6
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.4e-105 387.5 231 77.1
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 6.3e-103 378.6 251 74.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 9.1e-102 374.8 394 70.8
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 6.8e-97 358.6 394 62.2
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 1.9e-86 323.9 344 64.5
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.7e-85 320.1 155 92.3
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 5.2e-81 305.8 149 91.3
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 5.2e-81 305.8 347 75.8
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 3.4e-80 303.1 173 79.8
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 6.6e-76 288.9 359 66.6
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 1.9e-75 287.3 326 73.3
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 1.2e-72 278.1 322 75.2
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.6e-72 276.9 137 89.1
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.2e-70 270.0 351 65.2
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 8.6e-68 261.9 144 85.4
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 6.2e-66 255.8 153 80.4
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 1.4e-65 254.6 264 54.2
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 1.6e-61 241.1 175 69.1
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 1.0e-60 238.4 222 51.4
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 2.3e-60 237.3 326 57.4
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 1.9e-59 234.2 204 53.9
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 1.5e-56 224.6 302 67.9
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 2.0e-56 224.2 326 56.4
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 5.4e-54 216.1 301 70.1
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 9.3e-54 215.3 112 87.5
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 9.6e-51 205.3 102 92.2
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 5.8e-48 196.1 97 94.8
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.4e-47 192.2 96 89.6
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.7e-45 187.2 424 44.6
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.8e-44 184.5 307 56.7
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 7.4e-43 179.1 96 86.5
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.6e-42 177.9 129 64.3
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 9.0e-41 172.2 97 82.5
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 2.9e-39 167.2 86 91.9
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.8e-39 166.8 255 66.3
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 7.1e-38 162.5 260 68.8
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 7.1e-38 162.5 84 86.9
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.0e-36 158.7 83 85.5
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 2.5e-35 154.1 80 91.2
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 1.1e-33 148.7 80 88.8
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 5.3e-33 146.4 80 86.2
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 5.0e-31 139.8 291 57.4
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 7.9e-29 132.5 84 78.6
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 7.4e-27 125.9 77 79.2
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 5.3e-25 119.8 327 44.0
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 3.8e-23 113.6 268 41.4
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 5.5e-22 109.8 74 67.6
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 7.9e-21 105.9 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 2.3e-20 104.4 68 67.6
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 6.7e-20 102.8 113 66.4
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 1.1e-14 85.5 79 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 3.9e-12 77.0 259 50.2
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 5.1e-12 76.6 43 83.7
CDE02G0875 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 4.2e-06 57.0 61 60.7


User provided reference genes

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