Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 7.0e-170 600.5 300 100.0
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.2e-92 344.0 226 81.4
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 1.0e-80 304.3 224 73.2
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 5.3e-77 292.0 216 71.3
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 2.0e-76 290.0 225 69.8
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 5.9e-76 288.5 234 68.4
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 1.0e-75 287.7 229 69.9
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.5e-74 283.9 226 69.9
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 2.5e-74 283.1 225 68.9
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 2.5e-74 283.1 215 70.2
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 1.2e-73 280.8 227 70.0
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 1.2e-73 280.8 220 68.6
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 2.7e-73 279.6 225 68.9
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 6.1e-73 278.5 226 69.0
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 1.8e-72 276.9 216 68.5
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 2.3e-72 276.6 211 72.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 2.3e-72 276.6 227 69.6
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 5.2e-72 275.4 212 68.9
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 8.8e-72 274.6 231 68.4
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 8.8e-72 274.6 216 68.5
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 4.4e-71 272.3 212 68.9
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 5.7e-71 271.9 227 65.6
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 2.2e-70 270.0 225 66.2
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 3.7e-70 269.2 209 68.9
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 4.8e-70 268.9 209 68.9
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 8.3e-70 268.1 197 73.1
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 1.1e-69 267.7 213 69.5
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.8e-69 266.9 189 75.1
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.8e-69 266.9 189 75.1
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.8e-69 266.9 227 65.6
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 3.1e-69 266.2 212 69.3
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 4.1e-69 265.8 224 67.0
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 5.4e-69 265.4 212 67.0
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 7.0e-69 265.0 209 69.9
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 9.1e-69 264.6 228 65.8
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 2.0e-68 263.5 204 69.1
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 2.0e-68 263.5 204 69.1
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.0e-68 263.5 204 69.1
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 2.0e-68 263.5 204 69.1
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 2.0e-68 263.5 202 68.8
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.7e-68 263.1 203 71.9
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 3.5e-68 262.7 195 71.8
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 4.5e-68 262.3 193 73.1
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 7.7e-68 261.5 223 65.5
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 7.7e-68 261.5 223 65.5
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.3e-67 260.8 227 65.6
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 1.7e-67 260.4 193 71.5
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 2.2e-67 260.0 209 65.6
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 2.2e-67 260.0 217 64.1
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 2.2e-67 260.0 234 61.5
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.9e-67 259.6 195 71.8
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 2.9e-67 259.6 195 69.7
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 2.9e-67 259.6 195 71.3
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 2.9e-67 259.6 204 66.2
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 3.8e-67 259.2 193 69.9
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 5.0e-67 258.8 172 77.9
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 5.0e-67 258.8 210 69.0
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 5.0e-67 258.8 178 77.5
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 8.5e-67 258.1 245 60.8
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 8.5e-67 258.1 217 66.8
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.1e-66 257.7 194 70.6
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 1.1e-66 257.7 194 70.6
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 1.5e-66 257.3 193 68.9
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.5e-66 257.3 204 68.6
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.9e-66 256.9 222 64.9
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 1.9e-66 256.9 193 70.5
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 2.5e-66 256.5 201 69.2
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 3.2e-66 256.1 247 60.3
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 4.2e-66 255.8 192 71.9
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 4.2e-66 255.8 194 70.6
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 5.5e-66 255.4 252 57.9
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 7.2e-66 255.0 189 74.6
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 7.2e-66 255.0 230 62.6
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 2.1e-65 253.4 211 65.9
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.1e-65 253.4 213 68.1
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 2.1e-65 253.4 195 69.7
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 3.6e-65 252.7 205 67.8
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.6e-65 252.7 220 63.6
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 1.0e-64 251.1 193 68.4
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 1.0e-64 251.1 243 60.1
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 1.4e-64 250.8 225 61.3
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 3.0e-64 249.6 193 69.9
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 5.2e-64 248.8 193 67.9
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.3e-62 244.2 225 62.7
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 3.7e-62 242.7 187 70.6
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 5.4e-61 238.8 193 64.8
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 9.2e-61 238.0 207 62.3
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 5.9e-60 235.3 206 62.1
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 7.7e-60 235.0 219 61.2
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 1.3e-59 234.2 153 79.7
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.1e-58 231.1 193 62.2
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.2e-57 227.6 195 64.1
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 2.8e-57 226.5 176 71.6
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 2.8e-57 226.5 220 57.7
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 3.6e-57 226.1 137 81.8
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 4.0e-56 222.6 194 62.9
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.4e-55 219.5 204 63.7
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 1.8e-53 213.8 130 82.3
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.0e-51 208.0 195 60.0
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 9.5e-50 201.4 148 70.9
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 9.5e-50 201.4 193 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 4.7e-49 199.1 195 55.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.4e-48 197.6 186 58.1
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 8.9e-48 194.9 195 56.4
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 2.9e-46 189.9 122 79.5
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 3.7e-46 189.5 202 54.0
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 4.1e-45 186.0 120 77.5
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.2e-41 174.5 157 62.4
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 2.8e-41 173.3 162 59.3
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 2.0e-39 167.2 183 51.4
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 5.8e-39 165.6 93 87.1
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 8.3e-38 161.8 166 55.4
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.1e-37 161.4 105 80.0
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.5e-34 150.2 309 35.9
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 5.6e-34 149.1 259 39.0
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.6e-34 149.1 120 66.7
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 6.9e-24 115.5 62 90.3
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 3.4e-23 113.2 63 85.7
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.4e-21 107.1 70 80.0
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 2.3e-19 100.5 197 34.5
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 4.0e-16 89.7 63 73.0
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 6.7e-11 72.4 34 97.1
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.5e-10 71.2 50 74.0
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.8e-08 64.3 116 31.9
SHI09501 Sapria himalayana HOM05D005540 ORTHO05D006932 5.3e-08 62.8 64 53.1
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 6.9e-08 62.4 37 78.4
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.9e-06 57.0 49 63.3


User provided reference genes

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