Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.8e-97 357.8 182 100.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.6e-79 299.7 163 90.8
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.7e-78 296.2 163 91.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 6.5e-78 294.3 163 89.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 8.5e-78 293.9 163 89.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.1e-77 293.5 162 90.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.9e-77 292.7 163 88.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.5e-77 292.4 163 89.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 3.2e-77 292.0 162 89.5
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 4.2e-77 291.6 163 89.6
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.2e-76 290.0 162 88.9
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 1.2e-76 290.0 163 89.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.7e-76 288.9 162 88.9
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 6.1e-76 287.7 163 88.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.0e-75 287.0 163 86.5
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.0e-75 287.0 163 86.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.4e-75 286.6 160 88.1
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 1.4e-75 286.6 163 87.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.4e-75 286.6 163 86.5
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.8e-75 286.2 163 87.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.3e-75 285.8 162 87.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.0e-75 285.4 162 88.9
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.0e-75 285.0 163 86.5
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 5.2e-75 284.6 162 87.0
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.8e-75 284.3 163 85.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 6.8e-75 284.3 163 87.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.8e-75 283.9 163 85.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-74 283.5 163 85.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.5e-74 283.1 163 87.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.0e-74 282.7 162 87.0
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.6e-74 282.3 163 86.5
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 3.4e-74 282.0 163 85.9
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 9.8e-74 280.4 163 85.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.3e-73 280.0 163 85.9
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.7e-73 279.6 163 84.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 2.2e-73 279.3 162 87.7
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.2e-73 279.3 162 87.7
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.2e-73 279.3 163 84.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.8e-73 278.9 163 84.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 3.7e-73 278.5 163 83.4
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.7e-73 278.5 163 83.4
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 4.8e-73 278.1 163 83.4
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.8e-73 278.1 162 87.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 6.3e-73 277.7 162 85.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-72 276.6 163 82.8
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.4e-72 276.6 163 82.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.4e-72 276.6 163 82.8
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.8e-72 276.2 163 82.8
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.8e-72 276.2 163 82.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.8e-72 276.2 163 84.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.4e-72 275.8 162 83.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.4e-72 275.8 162 85.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.1e-72 275.4 163 82.2
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.1e-72 275.4 163 82.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 4.1e-72 275.0 163 85.3
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.0e-72 274.2 162 85.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 7.0e-72 274.2 163 83.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 9.1e-72 273.9 163 83.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 9.1e-72 273.9 162 84.0
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-71 273.5 163 83.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-71 273.5 163 82.8
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-71 273.1 163 83.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.6e-71 273.1 162 82.1
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-71 273.1 162 85.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.6e-71 273.1 163 82.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.0e-71 272.7 163 81.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.0e-71 272.7 163 83.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.0e-71 272.7 163 82.2
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.0e-71 272.7 163 82.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.5e-71 271.9 163 82.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.5e-71 271.9 162 82.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.5e-71 271.6 163 82.2
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.5e-71 271.6 163 82.2
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.9e-71 271.2 163 81.0
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 7.7e-71 270.8 163 83.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.0e-70 270.4 163 81.6
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-70 270.0 163 81.6
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.7e-70 269.6 163 84.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.2e-70 269.2 162 83.3
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.2e-70 269.2 163 84.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.2e-70 269.2 163 81.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.9e-70 268.9 163 82.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.8e-70 268.5 163 81.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.8e-70 268.5 163 81.6
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.0e-70 268.1 163 82.2
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 5.0e-70 268.1 162 80.9
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.0e-70 268.1 163 82.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.5e-70 267.7 161 82.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.5e-70 267.3 162 82.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.5e-70 267.3 163 81.0
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-69 266.9 153 86.9
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-69 266.9 163 81.0
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.9e-69 266.2 163 81.6
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.9e-69 266.2 171 77.2
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 2.5e-69 265.8 163 81.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-69 265.8 161 82.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.5e-69 265.8 161 82.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.2e-69 265.4 163 79.1
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.2e-69 265.4 163 79.1
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.2e-69 265.4 161 80.7
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.5e-69 264.6 162 80.2
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.5e-69 264.6 161 82.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 7.2e-69 264.2 163 80.4
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.2e-68 263.5 196 69.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 2.7e-68 262.3 163 79.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.6e-68 261.9 163 80.4
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.1e-68 261.2 163 79.8
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.4e-67 260.0 163 80.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.8e-67 259.6 163 77.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 2.3e-67 259.2 163 77.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.0e-67 258.8 162 79.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 3.0e-67 258.8 163 77.3
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 4.0e-67 258.5 161 79.5
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.2e-67 258.1 163 78.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 8.8e-67 257.3 163 78.5
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.2e-66 256.9 163 79.8
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.5e-66 256.5 163 78.5
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.0e-66 256.1 194 69.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.6e-66 255.8 162 77.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.4e-66 255.0 162 78.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.7e-66 254.6 163 78.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 9.8e-66 253.8 162 76.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.3e-65 253.4 163 78.5
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.8e-65 252.3 163 76.1
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 3.7e-65 251.9 186 69.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.9e-65 251.5 191 69.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-64 250.0 216 62.5
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.1e-64 248.4 216 62.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.7e-63 245.7 155 77.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.5e-63 245.4 170 72.9
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.7e-63 244.2 162 74.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 7.3e-61 237.7 201 60.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.0e-58 229.6 140 82.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.6e-54 214.2 123 82.9
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.5e-53 212.6 170 62.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.7e-49 199.9 163 62.0
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.4e-49 198.0 163 65.6
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.2e-47 193.7 162 59.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.8e-47 191.0 163 63.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.9e-45 186.4 361 36.0
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.1e-44 183.0 108 79.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.4e-43 180.3 109 77.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.1e-40 170.6 107 76.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.2e-39 167.2 172 51.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-37 158.3 99 79.8
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.8e-36 156.0 99 77.8
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.5e-34 150.2 101 77.2
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.7e-33 146.7 159 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.9e-30 135.6 107 62.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 7.3e-29 131.3 104 68.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.4e-26 122.5 63 92.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 4.4e-26 122.1 63 90.5
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 4.9e-25 118.6 64 84.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.7e-23 112.8 177 38.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.3e-22 109.8 160 42.5
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.3e-21 104.8 56 94.6
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 7.3e-21 104.8 125 47.2
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.8e-20 102.8 172 39.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.6e-20 102.4 62 71.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.4e-18 95.9 57 78.9
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 4.0e-11 72.4 49 83.7


User provided reference genes

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