Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 0.0e+00 1301.6 781 100.0
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.3e-167 594.3 597 59.6
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 5.2e-164 582.4 585 57.1
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 2.4e-137 493.8 502 71.5
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.5e-115 421.4 624 46.2
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.6e-112 409.8 582 45.7
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 2.5e-110 404.1 570 45.1
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.3e-106 391.7 558 45.0
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.1e-100 372.1 574 43.6
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 4.4e-99 366.7 585 43.6
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 4.2e-97 360.1 587 42.6
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-96 356.7 454 49.8
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.9e-95 353.6 584 43.0
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 3.3e-94 350.5 534 44.9
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 8.1e-93 345.9 458 49.3
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 6.9e-84 316.2 458 46.1
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.5e-80 303.9 431 46.9
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 7.9e-80 302.8 441 43.5
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 1.3e-79 302.0 246 68.7
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 2.1e-77 294.7 479 42.6
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 8.2e-77 292.7 378 50.0
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.8e-76 291.6 291 54.6
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 1.0e-74 285.8 570 38.2
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.9e-74 284.3 413 46.7
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.4e-73 282.0 455 43.1
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 1.8e-71 275.0 431 42.0
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 3.9e-71 273.9 398 44.7
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 1.3e-69 268.9 339 48.7
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 2.1e-69 268.1 611 34.9
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.1e-68 265.8 309 51.8
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 5.3e-68 263.5 325 49.5
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.5e-67 261.9 309 51.5
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.3e-66 258.8 427 43.1
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 2.9e-66 257.7 296 51.7
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 2.9e-66 257.7 441 42.6
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 3.8e-66 257.3 423 41.4
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 5.0e-66 256.9 416 43.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.1e-65 255.8 441 42.4
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 3.2e-65 254.2 310 50.0
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 7.2e-65 253.1 314 49.0
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 2.7e-64 251.1 455 39.8
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.0e-63 249.2 404 42.6
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.8e-63 248.4 431 39.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 2.3e-63 248.1 251 56.6
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.9e-62 245.0 543 37.8
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 7.4e-62 243.0 464 39.2
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 9.7e-62 242.7 583 34.6
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.3e-61 242.3 426 40.1
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 4.8e-61 240.4 423 41.8
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.1e-60 239.2 298 49.0
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.8e-60 238.4 333 44.4
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.8e-60 238.4 308 46.8
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 2.4e-60 238.0 431 39.7
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 2.0e-59 235.0 603 34.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 2.6e-59 234.6 291 50.5
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 2.9e-58 231.1 544 34.9
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 2.9e-58 231.1 448 40.6
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 2.9e-58 231.1 268 51.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 5.0e-58 230.3 201 61.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 8.5e-58 229.6 468 37.8
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.9e-57 228.4 284 48.6
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 4.6e-56 223.8 312 44.6
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 9.7e-54 216.1 459 38.1
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.4e-52 212.2 420 39.0
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.4e-52 212.2 254 49.2
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 2.4e-52 211.5 254 48.8
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 3.1e-52 211.1 254 50.4
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.3e-52 210.3 254 48.4
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 9.1e-52 209.5 254 48.8
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.5e-51 207.2 230 52.2
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 5.9e-51 206.8 326 43.3
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.7e-50 205.3 189 59.3
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 5.0e-50 203.8 265 48.3
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 7.2e-49 199.9 286 44.4
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 9.4e-49 199.5 254 48.0
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 9.4e-49 199.5 196 56.6
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 3.6e-48 197.6 552 33.2
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.8e-47 195.3 385 37.9
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 5.2e-47 193.7 180 57.8
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.4e-44 184.9 346 39.9
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 7.0e-44 183.3 346 39.6
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.6e-43 182.2 333 39.9
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 4.5e-43 180.6 410 33.7
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 5.9e-43 180.3 192 51.6
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 7.7e-43 179.9 302 42.1
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.9e-42 177.9 296 40.2
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 2.9e-42 177.9 442 33.3
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 8.5e-42 176.4 305 40.7
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.5e-41 174.9 261 44.1
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 4.2e-41 174.1 261 44.1
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 5.5e-41 173.7 261 44.1
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 7.2e-41 173.3 261 43.7
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 7.2e-41 173.3 261 43.7
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.0e-39 169.5 300 40.7
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 3.0e-39 167.9 169 57.4
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 2.0e-38 165.2 312 38.1
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 7.5e-38 163.3 327 38.2
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 7.5e-38 163.3 421 34.7
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 9.7e-38 162.9 270 40.0
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.2e-35 156.0 210 47.1
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 2.0e-35 155.2 312 35.9
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 3.5e-35 154.5 435 34.0
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 5.0e-34 150.6 419 31.7
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.2e-33 147.9 323 36.5
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 1.2e-32 146.0 177 49.2
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 1.5e-30 139.0 171 46.8
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 2.4e-28 131.7 126 51.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.2e-27 129.4 205 44.4
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 3.5e-27 127.9 195 44.1
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 2.3e-26 125.2 177 42.4
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 1.5e-25 122.5 253 36.8
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.5e-25 121.7 272 37.9
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.5e-22 112.5 161 46.0
Actinidia21470 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.7e-21 107.8 211 40.8
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.4e-20 104.0 262 34.4
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 5.9e-19 100.5 177 40.1
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 2.3e-18 98.6 181 38.7
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 2.1e-16 92.0 118 44.1
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 4.7e-16 90.9 176 35.8
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 1.8e-15 89.0 186 36.0
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.0e-14 85.5 110 44.5
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.3e-13 82.8 112 43.8
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.3e-13 82.8 374 27.5
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.4e-13 80.5 76 61.8
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 6.4e-13 80.5 59 64.4
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 1.1e-12 79.7 80 53.8
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 1.8e-12 79.0 112 42.9
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 3.5e-11 74.7 193 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 1.9e-09 68.9 155 32.9
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 4.3e-09 67.8 173 32.4
Actinidia21472 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.2e-08 66.2 142 38.7
DCAR_017916 Daucus carota HOM05D004690 ORTHO05D005527 1.2e-08 66.2 156 32.1
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 2.1e-08 65.5 155 33.5
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 3.6e-08 64.7 79 46.8
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.7e-08 64.3 239 27.2
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 1.8e-07 62.4 42 69.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 6.8e-07 60.5 163 31.3
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 8.9e-07 60.1 224 27.2
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 1.5e-06 59.3 155 32.3
Lsat_1_v5_gn_5_89380 Lactuca sativa HOM05D004690 ORTHO05D005527 7.5e-06 57.0 147 30.6


User provided reference genes

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