Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 0.0e+00 1238.4 717 100.0
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.1e-297 1025.4 735 83.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.2e-201 706.4 738 64.1
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 5.2e-195 685.3 760 60.4
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 4.3e-149 532.7 817 48.2
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 6.2e-148 528.9 761 51.5
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.3e-145 521.2 762 51.2
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 4.9e-145 519.2 725 53.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 7.1e-144 515.4 738 52.4
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.3e-142 511.1 746 49.6
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.5e-141 507.7 744 51.9
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 6.7e-134 482.3 814 42.4
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.0e-129 468.4 774 47.0
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 8.4e-129 465.3 805 44.7
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.3e-125 453.4 775 49.0
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 3.3e-125 453.4 775 49.0
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 1.1e-123 448.4 765 46.9
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 4.0e-123 446.4 493 55.2
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.4e-122 443.4 733 46.8
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.0e-121 441.8 501 56.3
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.0e-121 441.8 768 47.3
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.7e-121 441.0 654 51.8
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 5.5e-120 436.0 810 44.7
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 9.3e-120 435.3 500 55.6
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.5e-119 433.3 449 56.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 7.4e-117 425.6 824 40.7
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.6e-116 424.5 500 54.4
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 9.0e-115 418.7 667 49.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 7.7e-114 415.6 761 46.6
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.5e-112 410.6 793 45.6
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 4.2e-112 409.8 794 44.8
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-111 408.3 794 44.7
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 3.6e-111 406.8 761 46.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 3.0e-110 403.7 810 45.1
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 4.1e-107 393.3 508 50.0
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-106 391.7 793 43.9
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.0e-106 391.0 793 43.8
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.2e-105 387.5 771 45.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 8.5e-105 385.6 517 48.9
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 3.2e-104 383.6 429 53.8
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 3.6e-103 380.2 503 48.5
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 3.0e-102 377.1 736 45.2
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.6e-98 364.0 768 44.8
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.5e-96 358.2 470 48.5
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.9e-96 357.8 485 47.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 4.7e-95 353.2 535 45.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 6.1e-95 352.8 426 51.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 8.0e-95 352.4 447 49.9
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.3e-94 350.9 769 41.4
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 6.7e-94 349.4 522 45.0
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 8.8e-94 349.0 428 50.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.0e-93 347.8 429 50.6
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.3e-92 345.1 766 42.2
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.7e-92 344.7 427 50.8
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 7.0e-91 339.3 736 42.7
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 7.0e-91 339.3 423 48.0
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 2.0e-90 337.8 442 47.3
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 7.7e-90 335.9 469 46.9
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.0e-89 335.5 527 45.4
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.0e-89 335.5 735 39.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 3.8e-89 333.6 766 42.6
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.9e-88 331.3 457 48.6
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 3.2e-88 330.5 515 44.9
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.2e-87 328.6 778 38.6
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 2.7e-87 327.4 445 47.9
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 6.1e-87 326.2 373 53.6
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.8e-86 324.7 451 49.0
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.2e-85 322.0 445 46.1
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 5.7e-85 319.7 734 40.1
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 3.1e-83 313.9 443 45.4
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 3.1e-83 313.9 719 38.5
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.6e-82 311.6 451 47.2
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 5.9e-82 309.7 772 36.3
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 2.2e-81 307.8 421 48.0
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 3.8e-81 307.0 436 46.1
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 1.9e-80 304.7 470 46.2
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.6e-79 301.6 492 43.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.7e-79 300.8 481 44.9
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 4.7e-79 300.1 477 44.0
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.0e-78 297.0 406 48.5
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 5.2e-78 296.6 370 50.5
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 8.8e-78 295.8 445 45.4
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.0e-77 294.7 431 47.3
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 3.4e-77 293.9 780 41.9
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.9e-76 290.0 790 38.0
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 1.2e-74 285.4 913 36.4
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.3e-73 281.2 817 37.9
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 2.9e-73 280.8 436 50.9
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 2.9e-73 280.8 441 45.4
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 3.8e-73 280.4 453 48.1
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.9e-72 278.1 447 43.6
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.9e-72 278.1 573 38.9
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 7.2e-72 276.2 371 48.8
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 9.5e-72 275.8 439 48.7
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-70 271.9 442 49.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.0e-70 270.8 408 47.3
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.2e-70 270.0 436 47.2
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 8.9e-70 269.2 420 43.6
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 2.6e-69 267.7 325 49.8
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.9e-68 264.2 440 47.7
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 2.9e-68 264.2 491 41.3
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.4e-67 261.2 423 44.2
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 9.2e-67 259.2 373 49.9
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.7e-66 257.7 406 43.3
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.5e-66 257.3 439 42.4
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.0e-65 255.8 306 51.3
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.3e-65 255.4 416 42.8
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 2.9e-65 254.2 439 41.5
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 6.6e-65 253.1 443 41.5
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.1e-64 252.3 450 42.0
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.1e-64 252.3 450 42.0
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 2.5e-64 251.1 490 38.2
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 8.0e-63 246.1 473 38.9
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.4e-62 245.4 414 42.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.3e-62 244.6 442 41.0
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.9e-59 235.0 439 40.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 5.4e-59 233.4 506 37.0
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 6.0e-58 229.9 427 39.6
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.0e-57 229.2 427 41.0
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-57 228.4 358 41.3
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 3.0e-57 227.6 369 42.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 1.1e-56 225.7 357 44.5
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 4.3e-56 223.8 458 38.4
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 6.2e-55 219.9 404 40.1
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 2.3e-54 218.0 235 51.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 8.9e-54 216.1 210 58.6
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 7.5e-53 213.0 406 41.1
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.4e-51 208.0 177 55.9
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.4e-51 208.0 323 42.7
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.2e-51 207.6 396 38.4
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 9.2e-51 206.1 144 72.9
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.2e-42 179.1 204 52.5
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 3.5e-42 177.6 189 49.2
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 4.3e-40 170.6 227 44.5
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 3.1e-38 164.5 136 55.1
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 9.9e-37 159.5 150 54.7
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.4e-35 155.6 138 54.3
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 9.3e-35 152.9 201 43.8
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.7e-34 151.4 136 55.9
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 3.9e-33 147.5 315 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 1.5e-32 145.6 209 42.1
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 1.7e-28 132.1 95 70.5
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.4e-27 129.0 95 69.5
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 4.0e-22 110.9 86 66.3
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.9e-16 92.0 199 38.7
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 3.3e-16 91.3 115 45.2
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 3.7e-15 87.8 71 60.6
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.9e-12 78.2 137 33.6
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 8.4e-12 76.6 173 32.4
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.8e-09 68.9 100 40.0
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.8e-06 58.9 58 51.7


User provided reference genes

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