Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 8.4e-171 603.6 304 100.0
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.3e-160 569.7 304 95.4
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 8.4e-155 550.4 304 91.1
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 1.8e-149 532.7 326 84.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 4.1e-149 531.6 304 87.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 1.5e-143 513.1 305 85.6
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 5.7e-143 511.1 308 84.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 5.7e-143 511.1 305 84.6
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 2.2e-142 509.2 305 84.6
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.1e-141 506.9 306 84.3
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 1.8e-141 506.1 305 84.3
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 3.1e-141 505.4 305 83.9
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 7.7e-140 500.7 307 84.0
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 2.5e-138 495.7 304 81.6
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.1e-135 486.9 304 80.9
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 2.0e-135 486.1 306 81.4
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.6e-135 485.7 304 80.9
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 2.6e-135 485.7 311 80.4
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 9.7e-135 483.8 304 80.6
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 3.7e-134 481.9 304 80.3
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 5.3e-133 478.0 307 78.8
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.2e-132 476.9 298 78.2
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 1.5e-132 476.5 269 89.2
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 3.5e-132 475.3 304 78.3
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 3.5e-132 475.3 305 79.3
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 5.9e-132 474.6 304 77.6
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 5.9e-132 474.6 308 79.5
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 2.2e-131 472.6 304 77.3
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 6.5e-131 471.1 305 79.7
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 2.5e-130 469.2 304 77.0
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.5e-130 469.2 297 78.8
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 3.2e-130 468.8 286 83.9
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 4.2e-130 468.4 306 77.5
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 5.5e-130 468.0 304 76.6
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.7e-129 465.7 297 78.5
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 3.6e-129 465.3 277 85.6
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 8.0e-129 464.2 323 75.9
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 1.0e-128 463.8 270 87.0
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 3.9e-128 461.8 306 76.5
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 6.7e-128 461.1 277 80.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 6.7e-128 461.1 304 77.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 8.8e-128 460.7 305 76.4
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 4.4e-127 458.4 306 75.5
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 5.7e-127 458.0 305 76.4
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 7.4e-127 457.6 359 69.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 9.7e-127 457.2 279 81.0
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 2.2e-126 456.1 343 71.7
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 3.7e-126 455.3 301 73.8
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 6.3e-126 454.5 296 76.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.4e-125 453.4 308 75.3
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 1.4e-125 453.4 304 74.7
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 2.4e-125 452.6 248 91.5
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 3.1e-125 452.2 304 75.7
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 3.1e-125 452.2 305 75.4
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.1e-125 452.2 304 75.7
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 4.1e-125 451.8 304 75.7
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 1.2e-124 450.3 288 80.2
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 3.5e-124 448.7 313 72.5
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 4.5e-124 448.4 278 78.1
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 5.9e-124 448.0 298 79.2
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.7e-123 446.4 294 76.2
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 1.1e-122 443.7 317 74.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 1.5e-122 443.4 312 73.7
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 2.5e-122 442.6 318 71.7
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.2e-122 442.2 296 75.3
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 7.2e-122 441.0 308 74.7
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 2.7e-121 439.1 269 81.8
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.7e-121 439.1 305 73.8
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 3.0e-120 435.6 296 74.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 9.7e-119 430.6 303 71.3
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 3.7e-118 428.7 292 72.6
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 3.7e-118 428.7 304 70.4
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 4.8e-118 428.3 293 73.0
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 4.8e-118 428.3 303 70.6
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.8e-117 426.4 303 71.3
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.8e-117 426.4 286 78.3
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.1e-117 425.6 311 71.4
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 7.0e-117 424.5 303 71.0
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 9.1e-117 424.1 280 75.4
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 1.0e-115 420.6 305 71.5
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 2.2e-115 419.5 286 73.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 3.2e-114 415.6 305 69.8
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.4e-114 414.1 286 71.7
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 1.2e-113 413.7 304 70.1
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 4.7e-113 411.8 267 75.7
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.0e-112 410.6 305 69.5
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 2.3e-112 409.5 267 74.9
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 9.8e-111 404.1 304 67.1
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 4.1e-109 398.7 259 75.7
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.0e-109 397.9 281 68.3
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 2.7e-108 396.0 292 68.8
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.3e-107 393.7 263 71.9
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 1.7e-107 393.3 292 68.5
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 3.6e-105 385.6 292 67.5
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 4.0e-104 382.1 293 68.6
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 1.7e-102 376.7 280 68.2
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 7.0e-101 371.3 293 66.6
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 3.5e-100 369.0 265 72.8
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 3.9e-99 365.5 244 71.3
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.6e-99 364.8 263 71.1
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 1.5e-98 363.6 259 71.4
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 9.5e-98 360.9 259 71.4
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 3.1e-96 355.9 251 71.7
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 8.9e-96 354.4 250 74.0
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.2e-95 354.0 304 62.8
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.7e-94 350.1 259 69.1
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 2.9e-94 349.4 273 64.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 3.7e-94 349.0 262 65.6
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 2.0e-92 343.2 258 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 3.9e-91 339.0 249 67.9
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 5.0e-91 338.6 218 79.4
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 4.3e-90 335.5 203 81.8
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 9.5e-90 334.3 307 63.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 1.4e-88 330.5 249 65.1
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 2.0e-87 326.6 216 77.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 5.8e-87 325.1 273 60.4
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 6.6e-83 311.6 226 69.0
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 6.6e-83 311.6 270 61.5
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.0e-80 302.4 249 61.8
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 2.4e-72 276.6 220 65.9
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 1.4e-61 240.7 286 47.9
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 2.1e-60 236.9 248 52.4
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 2.1e-60 236.9 305 43.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 1.6e-52 210.7 120 84.2
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 9.6e-50 201.4 155 65.8
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 4.8e-49 199.1 121 80.2
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 5.3e-48 195.7 268 42.2
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 7.6e-47 191.8 269 41.3
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 1.7e-46 190.7 120 75.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.3e-38 164.5 118 69.5
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.7e-38 164.1 86 91.9
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-34 151.4 133 61.7
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 7.7e-31 138.7 83 78.3
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 4.3e-26 122.9 83 72.3
Sc17g0004710 Simmondsia chinensis HOM05D004931 ORTHO05D006579 9.7e-26 121.7 90 70.0
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 7.7e-23 112.1 76 75.0
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.2e-21 106.7 153 44.4
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 1.0e-19 101.7 288 29.2
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 1.5e-18 97.8 255 29.0
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 1.7e-17 94.4 83 57.8
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.7e-17 93.2 240 31.7
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 6.3e-17 92.4 317 26.8
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 1.4e-16 91.3 61 68.9
TPR.G27432 Trifolium pratense HOM05D004931 ORTHO05D006579 7.7e-15 85.5 81 58.0
BolC2t10441H Brassica oleracea HOM05D004931 ORTHO05D027277 1.0e-14 85.1 73 54.8
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.7e-14 84.3 210 27.1
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 3.8e-14 83.2 51 70.6
C01p27720 Brassica napus HOM05D004931 ORTHO05D027277 7.2e-13 79.0 67 55.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 2.7e-12 77.0 314 22.9
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 3.6e-12 76.6 314 22.9
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 3.6e-12 76.6 47 74.5
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 7.5e-10 68.9 41 75.6
BcaC03g16580 Brassica carinata HOM05D004931 ORTHO05D027277 3.7e-09 66.6 58 53.4
Os02g0513800 Oryza sativa ssp. japonica HOM05D023198 ORTHO05D294263 3.1e-08 63.5 230 25.7
BcaB03g12135 Brassica carinata HOM05D004931 ORTHO05D006579 6.5e-06 55.8 42 57.1


User provided reference genes

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