Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 6.6e-176 620.5 302 100.0
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.8e-118 429.1 249 80.3
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.4e-112 410.2 274 74.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 6.7e-112 407.9 252 74.2
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 9.7e-111 404.1 247 79.4
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.1e-109 398.7 247 77.7
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 9.1e-109 397.5 247 75.7
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.5e-108 395.2 259 75.7
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.5e-108 395.2 259 75.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 5.9e-108 394.8 255 72.5
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 3.8e-107 392.1 254 72.8
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.9e-106 389.8 247 74.5
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.5e-106 389.4 258 74.0
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 9.4e-106 387.5 247 72.5
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 2.0e-103 379.8 243 73.7
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.7e-102 376.7 247 71.7
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 7.0e-101 371.3 247 69.2
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.2e-100 370.5 249 72.3
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.6e-100 370.2 254 70.5
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.6e-100 370.2 248 69.4
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 7.7e-100 367.9 261 66.7
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 7.7e-100 367.9 240 69.6
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.0e-99 367.5 249 68.3
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 3.8e-99 365.5 240 71.2
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.1e-98 364.0 249 68.7
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 3.2e-98 362.5 243 67.5
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.2e-98 361.3 247 68.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 9.4e-98 360.9 261 65.5
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.2e-97 360.5 247 69.6
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.7e-97 359.4 247 68.4
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.7e-97 359.4 247 68.4
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 3.6e-97 359.0 255 67.5
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 8.0e-97 357.8 241 69.7
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.8e-96 356.7 247 68.8
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.5e-95 353.6 251 66.9
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.6e-95 352.8 251 67.3
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 9.8e-95 350.9 224 73.2
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 3.1e-93 345.9 248 67.7
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 4.1e-93 345.5 229 66.8
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 7.0e-93 344.7 249 66.3
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 1.2e-92 344.0 259 65.3
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 2.0e-92 343.2 249 64.7
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.0e-91 340.9 249 65.9
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.7e-91 340.1 241 65.1
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 5.0e-91 338.6 248 64.1
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 8.5e-91 337.8 267 62.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 4.2e-90 335.5 243 65.8
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 4.7e-89 332.0 226 69.5
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 6.1e-89 331.6 248 60.9
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 8.0e-89 331.3 265 62.3
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.0e-88 330.9 227 67.0
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 1.4e-88 330.5 248 62.1
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.3e-88 329.7 245 62.4
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 8.8e-88 327.8 245 62.0
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 8.8e-88 327.8 242 60.3
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.2e-87 327.4 251 64.1
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.5e-87 327.0 236 66.9
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.5e-87 327.0 253 63.6
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 4.4e-87 325.5 251 63.3
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 7.5e-87 324.7 245 64.5
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 9.8e-87 324.3 237 63.7
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 9.8e-87 324.3 250 59.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.7e-86 323.6 240 64.2
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.7e-86 323.6 265 60.4
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 2.8e-86 322.8 237 63.7
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 3.7e-86 322.4 254 59.4
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.9e-86 322.0 238 66.4
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.9e-86 322.0 238 66.4
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 1.4e-85 320.5 236 65.7
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-85 318.5 241 63.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-85 318.5 241 63.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-85 318.5 241 63.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-85 318.5 241 63.1
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 7.0e-85 318.2 241 64.7
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 7.0e-85 318.2 240 62.1
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.6e-84 317.0 251 60.2
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 2.7e-84 316.2 232 65.1
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 6.6e-83 311.6 273 58.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.5e-82 309.7 248 58.9
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.5e-79 300.4 329 48.3
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.4e-77 293.9 216 62.5
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.7e-76 289.7 246 59.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.6e-74 282.0 195 67.2
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.1e-73 280.0 200 68.5
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.7e-73 278.9 192 67.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 8.0e-73 278.1 250 57.6
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.8e-72 276.9 192 69.3
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-72 276.9 192 67.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.8e-72 276.9 192 67.7
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.0e-72 275.8 193 65.8
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.8e-72 275.0 192 66.1
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.8e-71 271.9 240 55.0
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.9e-69 266.9 247 57.9
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.3e-67 260.8 234 55.6
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.1e-66 257.7 228 54.8
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 9.5e-66 254.6 261 53.3
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-65 253.8 192 63.5
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.1e-64 251.1 247 52.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.2e-64 248.8 194 62.9
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.8e-64 248.4 253 51.8
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 2.6e-63 246.5 213 58.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.7e-60 236.5 195 59.5
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 6.6e-59 231.9 238 51.3
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 5.2e-56 222.2 144 73.6
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-54 217.2 202 55.0
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 2.9e-54 216.5 215 53.5
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 3.7e-54 216.1 241 47.3
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.0e-51 208.0 233 46.4
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-43 180.6 123 67.5
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.9e-43 179.5 121 68.6
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 1.4e-40 171.0 231 43.3
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.8e-40 170.6 208 43.3
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.4e-39 166.4 108 71.3
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.9e-37 160.6 213 43.7
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 7.1e-37 158.7 146 54.8
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.3e-35 154.5 315 34.3
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 5.6e-34 149.1 133 57.9
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 5.3e-32 142.5 112 61.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.1e-26 124.8 237 33.3
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 9.6e-26 121.7 228 38.6
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 6.2e-25 119.0 90 65.6
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 6.2e-25 119.0 90 65.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 4.8e-17 92.8 227 29.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.2e-15 88.2 55 69.1
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.2e-15 88.2 55 69.1
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 4.5e-15 86.3 200 31.5
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.6e-09 67.8 42 69.0
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 3.7e-09 66.6 39 76.9
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 4.5e-07 59.7 37 70.3
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.7e-07 58.9 39 64.1
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 5.0e-06 56.2 88 43.2


User provided reference genes

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