Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 0.0e+00 1186.4 610 100.0
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 0.0e+00 1112.4 643 90.8
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 8.2e-258 893.6 652 73.2
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 4.4e-227 791.6 723 63.8
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 3.6e-213 745.3 650 64.3
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.7e-210 736.5 649 62.9
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 2.3e-207 726.1 638 64.7
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.3e-206 722.2 651 64.1
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 6.1e-205 718.0 654 62.1
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 2.8e-202 709.1 645 62.0
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.7e-202 708.8 635 63.0
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 6.3e-202 708.0 651 63.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.4e-201 706.8 650 61.5
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 1.8e-201 706.4 657 60.6
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.2e-200 703.7 650 62.2
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.6e-200 703.4 651 62.4
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 2.0e-200 703.0 520 72.1
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 1.3e-199 700.3 640 63.3
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 1.7e-199 699.9 657 61.0
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.3e-199 699.5 678 60.8
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 2.3e-199 699.5 655 63.5
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.9e-199 699.1 638 61.8
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 2.9e-199 699.1 676 59.5
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 3.9e-199 698.7 652 60.9
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 8.6e-199 697.6 646 61.1
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 1.5e-198 696.8 640 62.0
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 2.8e-197 692.6 652 61.0
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.7e-197 691.8 635 62.0
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 3.1e-196 689.1 662 60.7
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 6.8e-196 688.0 619 62.7
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.3e-194 683.7 653 60.6
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 3.7e-194 682.2 652 59.5
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 8.3e-194 681.0 651 61.3
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.4e-193 680.2 652 60.3
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.9e-193 679.9 654 59.6
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-192 674.9 635 60.9
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.2e-189 667.2 652 60.3
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.6e-189 665.6 654 59.0
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.8e-188 663.3 638 59.7
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 4.0e-188 662.1 652 59.2
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 5.8e-187 658.3 654 59.0
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 9.2e-185 651.0 423 79.7
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 9.2e-185 651.0 622 60.1
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 4.6e-184 648.7 611 60.7
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 6.0e-184 648.3 653 58.3
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.3e-183 646.4 649 57.5
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 8.6e-183 644.4 677 56.6
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 1.5e-182 643.7 521 65.6
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 5.6e-182 641.7 673 57.2
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.2e-181 640.6 649 57.0
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 1.6e-181 640.2 649 58.2
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 6.8e-180 634.8 653 58.0
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 8.3e-178 627.9 621 59.3
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 1.9e-177 626.7 658 56.8
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 2.4e-172 609.8 649 57.2
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.2e-171 607.4 402 76.6
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 3.4e-171 605.9 627 56.9
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.3e-170 604.0 672 53.7
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.7e-170 603.6 664 55.3
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.9e-169 600.1 664 53.6
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 4.2e-169 599.0 669 53.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 5.4e-169 598.6 581 61.3
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.1e-168 596.7 396 76.0
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 2.7e-168 596.3 665 53.4
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 6.0e-168 595.1 620 53.5
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 6.0e-168 595.1 667 54.0
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.3e-167 593.2 662 52.7
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 2.3e-167 593.2 654 57.2
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 6.6e-167 591.7 637 55.1
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 8.1e-165 584.7 666 52.4
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.4e-164 583.2 588 59.9
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 9.0e-164 581.3 539 60.3
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 2.6e-163 579.7 692 51.3
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.3e-162 577.4 602 59.8
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 4.9e-162 575.5 620 55.6
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 7.1e-161 571.6 414 70.0
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 7.1e-161 571.6 624 55.3
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 2.3e-159 566.6 460 63.7
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-158 564.3 588 58.5
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 8.1e-157 558.1 649 51.6
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 2.6e-155 553.1 634 51.6
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 5.4e-153 545.4 645 52.1
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 1.6e-152 543.9 469 63.3
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 3.5e-152 542.7 434 68.0
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 2.3e-151 540.0 664 49.7
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 5.3e-148 528.9 449 63.3
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 2.0e-147 526.9 608 53.9
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.1e-145 521.2 628 49.8
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.2e-144 517.7 595 51.4
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 3.0e-143 513.1 653 47.5
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.7e-138 497.3 473 57.1
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 1.0e-135 488.0 364 68.7
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.3e-133 481.1 638 48.4
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 4.5e-131 472.6 507 55.0
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 2.9e-130 469.9 398 63.6
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-123 447.2 583 48.9
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 2.5e-121 440.3 451 52.5
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 5.5e-121 439.1 443 56.2
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 8.8e-119 431.8 583 46.3
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 5.7e-118 429.1 756 41.4
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.8e-116 424.1 480 55.2
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 1.6e-112 411.0 495 47.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 2.2e-109 400.6 285 71.9
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.8e-108 397.5 548 49.3
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.1e-108 396.4 473 50.5
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.3e-106 391.3 339 62.5
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.3e-98 364.8 423 55.3
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 1.2e-91 341.7 309 62.1
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 1.2e-88 331.6 621 40.3
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.4e-87 328.2 461 41.6
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.4e-84 318.2 192 79.7
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.3e-82 310.8 331 49.5
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 7.3e-81 305.8 441 47.4
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 6.2e-80 302.8 233 68.2
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 2.6e-78 297.4 412 47.3
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 3.4e-78 297.0 171 83.0
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 5.8e-78 296.2 411 48.7
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.5e-75 287.0 557 40.6
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.3e-73 280.4 161 82.6
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.4e-71 275.0 271 57.9
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 5.2e-71 273.1 315 49.2
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 4.1e-68 263.5 160 78.1
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 7.1e-68 262.7 358 48.0
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 6.6e-66 256.1 161 73.9
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 1.1e-65 255.4 190 70.5
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 6.2e-56 223.0 124 82.3
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 2.2e-53 214.5 163 65.0
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.9e-53 214.2 347 46.1
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 9.3e-52 209.1 126 78.6
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.3e-42 178.7 157 63.7
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-41 175.6 126 68.3
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 4.5e-38 163.7 384 30.7
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 1.4e-36 158.7 383 31.1
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.9e-36 158.3 320 38.1
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 3.0e-34 151.0 136 60.3
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.9e-34 150.6 113 73.5
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 8.7e-34 149.4 239 38.5
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 8.7e-34 149.4 239 38.5
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 3.1e-31 141.0 87 80.5
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.5e-30 138.7 140 58.6
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.0e-29 136.0 183 48.1
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 4.2e-28 130.6 111 66.7
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 2.7e-27 127.9 125 57.6
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 3.0e-26 124.4 69 81.2
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 1.9e-25 121.7 494 22.1
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 3.7e-24 117.5 92 65.2
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 2.2e-21 108.2 69 69.6
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 2.9e-21 107.8 68 82.4
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 1.8e-18 98.6 82 64.6
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 3.9e-18 97.4 273 32.2
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.2e-16 91.7 54 79.6
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 8.2e-16 89.7 149 49.0
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.1e-15 89.4 164 39.0
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.4e-15 89.0 227 31.7
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 3.1e-15 87.8 242 38.0
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 1.5e-14 85.5 74 60.8
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 5.0e-13 80.5 107 48.6
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-12 79.0 57 68.4
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-12 79.0 57 68.4
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-12 79.0 57 68.4
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-12 79.0 57 68.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-12 78.2 49 79.6
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 7.2e-12 76.6 49 77.6
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 9.4e-12 76.3 50 80.0
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.7e-11 74.7 93 46.2
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 1.8e-10 72.0 46 78.3
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 8.8e-10 69.7 40 85.0
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 1.5e-09 68.9 46 58.7
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 1.5e-09 68.9 46 58.7
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 2.6e-09 68.2 45 75.6
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.6e-09 68.2 81 45.7
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 4.4e-09 67.4 46 56.5
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 9.7e-09 66.2 48 66.7
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 6.3e-08 63.5 39 71.8


User provided reference genes

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