Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 0.0e+00 1125.5 615 100.0
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 5.6e-291 1003.8 615 90.7
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.8e-241 839.3 614 75.4
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 7.4e-182 641.3 596 63.4
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.6e-179 632.9 591 59.7
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 2.1e-173 613.2 591 58.2
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 6.5e-170 601.7 582 57.0
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.8e-167 593.6 582 57.2
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 1.7e-162 577.0 596 55.9
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.0e-162 575.5 578 55.4
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 5.0e-162 575.5 592 55.9
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 2.5e-161 573.2 581 56.3
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 3.2e-161 572.8 581 57.0
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.6e-160 570.5 601 54.6
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 2.3e-159 566.6 583 56.1
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.0e-159 566.2 583 56.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.0e-159 566.2 583 56.4
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 7.4e-158 561.6 593 54.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.8e-157 559.7 581 54.2
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.8e-157 558.9 581 53.9
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.4e-156 556.6 615 52.7
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 3.1e-156 556.2 595 53.4
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 5.3e-156 555.4 590 53.9
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 9.1e-156 554.7 595 52.9
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 1.2e-155 554.3 581 55.1
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 3.4e-155 552.7 549 56.5
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 5.9e-155 552.0 581 53.9
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 7.7e-155 551.6 582 53.8
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.1e-153 547.7 587 55.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.4e-153 547.4 595 52.6
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 3.6e-152 542.7 596 52.3
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.4e-151 540.8 594 51.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.9e-151 539.3 572 55.2
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 8.8e-151 538.1 579 52.3
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.5e-150 537.3 581 52.0
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 2.6e-150 536.6 581 54.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.7e-150 535.4 589 52.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 7.4e-150 535.0 582 53.6
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-149 533.9 584 52.9
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 2.4e-148 530.0 581 52.8
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.4e-148 530.0 582 52.7
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 4.1e-148 529.3 585 53.2
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 5.3e-148 528.9 585 53.0
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 9.1e-148 528.1 588 50.7
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.8e-146 522.7 591 50.8
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.8e-146 522.7 591 50.8
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.4e-145 520.8 591 51.1
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.5e-145 520.0 594 50.8
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.5e-145 520.0 578 52.4
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 3.2e-145 519.6 591 50.6
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 3.2e-145 519.6 585 50.9
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 9.4e-145 518.1 661 47.5
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 4.7e-144 515.8 553 51.4
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 8.0e-144 515.0 587 52.8
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 1.4e-143 514.2 594 52.2
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 4.4e-142 509.2 580 50.3
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 7.4e-142 508.4 581 50.9
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 2.8e-141 506.5 596 50.8
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.1e-140 502.7 580 51.6
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 2.0e-139 500.4 592 49.7
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-137 494.2 575 48.9
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.7e-136 490.0 439 61.3
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.0e-135 488.0 591 49.1
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 5.2e-135 485.7 579 48.4
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.5e-134 484.2 587 47.9
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 1.7e-133 480.7 587 50.4
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.7e-133 480.7 590 47.3
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 9.1e-132 474.9 581 50.8
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.0e-131 473.8 581 47.8
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.7e-130 470.7 589 48.7
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 6.5e-130 468.8 600 46.3
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.1e-129 468.0 580 48.3
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 1.5e-129 467.6 583 48.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.9e-129 467.2 592 46.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.2e-129 465.3 578 47.6
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 7.2e-129 465.3 576 47.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 2.7e-128 463.4 584 46.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 7.5e-126 455.3 582 45.7
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 3.7e-125 453.0 589 45.7
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.2e-123 448.0 589 46.5
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 2.0e-123 447.2 586 46.1
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.0e-122 444.9 588 44.7
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.8e-122 443.0 591 46.0
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.0e-122 442.6 589 45.2
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 6.6e-122 442.2 590 45.3
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 2.5e-121 440.3 572 45.8
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.6e-120 437.6 443 54.4
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 4.7e-120 436.0 428 55.6
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 6.8e-119 432.2 538 47.2
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 8.9e-119 431.8 580 44.3
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 3.4e-118 429.9 580 45.9
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.8e-116 424.1 428 56.5
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 4.1e-116 422.9 588 44.0
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 9.2e-116 421.8 580 45.2
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 4.5e-115 419.5 583 43.9
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.5e-115 419.5 590 46.6
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 5.9e-115 419.1 583 43.4
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-114 417.9 583 43.4
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.3e-114 417.9 578 43.9
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 1.7e-114 417.5 586 43.7
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.8e-114 416.4 589 44.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 5.0e-114 416.0 589 44.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 6.6e-114 415.6 589 44.7
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 1.5e-113 414.5 591 41.8
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.5e-113 411.8 592 43.2
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 9.5e-113 411.8 578 44.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.1e-112 410.6 583 42.7
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 5.8e-110 402.5 583 41.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.3e-109 401.4 583 41.9
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.1e-108 398.3 432 53.0
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 7.0e-108 395.6 429 53.6
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.2e-107 394.8 485 48.7
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.0e-106 391.7 399 54.4
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.0e-106 391.7 591 40.4
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.5e-105 387.9 431 51.7
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-105 387.5 579 41.8
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 4.3e-105 386.3 578 42.2
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.6e-104 383.3 579 41.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.2e-102 378.3 596 40.4
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.7e-101 373.2 583 41.3
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 2.7e-99 367.1 430 51.4
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.3e-98 364.8 296 68.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 1.6e-96 357.8 600 38.8
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.0e-95 353.2 249 77.5
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.0e-94 350.9 346 55.8
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 2.1e-91 340.9 301 61.8
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 4.6e-75 286.6 569 33.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.0e-74 283.9 586 33.8
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 4.0e-71 273.5 417 39.3
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.1e-68 265.4 286 52.8
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 9.3e-68 262.3 438 38.6
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 6.7e-58 229.6 364 40.4
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 1.5e-49 201.8 339 37.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.6e-48 198.4 369 34.7
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.6e-43 180.6 232 45.7
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.1e-43 179.9 284 36.6
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 7.4e-41 172.9 442 29.4
GSVIVG01023034001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.3e-39 166.8 190 53.7
GSVIVG01023046001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.2e-38 165.6 190 53.7
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 4.5e-38 163.7 546 26.0
Lj1A1063T36 Lonicera japonica HOM05D003578 ORTHO05D004021 6.1e-35 153.3 193 48.2
arahy.Tifrunner.gnm1.ann1.0Y2WZB Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-34 152.5 177 50.3
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.0e-33 148.3 164 49.4
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.7e-32 144.1 560 26.4
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.8e-32 143.7 149 53.0
Nn1g08562 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.1e-31 139.4 116 62.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 6.5e-29 133.3 562 25.1
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 1.1e-28 132.5 156 44.9
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 1.4e-28 132.1 195 36.9
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 4.7e-27 127.1 130 53.8
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.0e-26 124.4 148 43.2
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 5.2e-26 123.6 605 23.8
GSVIVG01023076001 Vitis vinifera HOM05D003578 ORTHO05D004021 5.2e-26 123.6 106 62.3
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 8.8e-26 122.9 178 41.6
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 6.3e-24 116.7 95 67.4
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 8.2e-24 116.3 116 48.3
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 7.0e-23 113.2 199 35.7
CAN.G1352.18 Capsicum annuum HOM05D003578 ORTHO05D004021 2.6e-22 111.3 198 38.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.6e-22 111.3 180 41.1
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.0e-21 109.4 123 52.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.9e-20 105.1 76 63.2
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 1.8e-18 98.6 123 43.1
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 2.3e-18 98.2 131 40.5
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 6.8e-18 96.7 80 60.0
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 4.4e-17 94.0 577 22.5
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.4e-17 94.0 116 50.9
GSVIVG01038756001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.7e-16 90.9 82 58.5
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.4e-15 89.0 73 57.5
GSVIVG01023027001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.8e-15 88.6 70 67.1
ATR0193G025 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.6e-14 85.5 111 41.4
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.5e-14 84.3 152 42.1
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 5.9e-14 83.6 340 24.1
Atru.chr6.1018 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-13 81.6 70 62.9
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 8.5e-13 79.7 253 27.3
ATR0686G029 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.6e-11 75.5 111 37.8
GSVIVG01023070001 Vitis vinifera HOM05D003578 ORTHO05D004021 3.0e-10 71.2 64 57.8
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 2.0e-09 68.6 84 39.3
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.5e-09 66.6 62 53.2
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 7.5e-09 66.6 62 53.2
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.4e-07 61.6 68 50.0
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 9.1e-07 59.7 85 47.1
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 7.7e-06 56.6 105 43.8


User provided reference genes

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