Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 0.0e+00 1161.7 672 100.0
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.1e-283 978.8 783 79.2
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.7e-246 855.5 789 71.6
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.4e-218 763.5 793 66.0
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 7.0e-218 761.1 792 65.8
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.0e-216 755.0 801 66.4
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 1.6e-214 750.0 795 64.3
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-213 745.7 791 65.7
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 3.0e-213 745.7 791 65.7
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 5.2e-213 745.0 769 65.4
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 1.5e-212 743.4 784 65.3
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.7e-209 732.6 795 64.2
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 7.7e-209 731.1 838 51.8
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.0e-208 730.7 793 64.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 2.2e-208 729.6 803 63.3
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 5.0e-208 728.4 793 63.3
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.5e-207 726.1 674 60.2
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-207 725.3 791 63.1
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-206 723.4 791 63.0
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.6e-206 723.4 799 64.3
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.7e-206 722.6 792 63.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.6e-206 722.2 792 63.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 4.7e-206 721.8 815 62.2
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 6.1e-206 721.5 794 63.1
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 8.0e-206 721.1 783 63.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 5.2e-205 718.4 685 58.1
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.2e-204 717.2 796 62.7
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.2e-204 717.2 795 62.9
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 5.7e-204 714.9 794 63.5
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.7e-203 713.4 791 63.2
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 4.1e-202 708.8 799 61.5
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 9.1e-202 707.6 788 62.7
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.7e-201 704.5 799 61.6
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 1.3e-200 703.7 796 62.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.7e-200 703.4 796 62.3
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.9e-200 702.6 796 62.2
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 3.8e-200 702.2 796 62.3
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 3.8e-200 702.2 790 62.5
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 8.5e-200 701.0 792 61.9
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 1.9e-199 699.9 744 64.5
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.9e-199 699.9 822 60.3
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.9e-199 699.9 747 65.2
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.5e-199 699.5 791 62.1
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.0e-197 694.1 783 61.6
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 2.3e-197 693.0 792 62.1
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.3e-197 693.0 788 61.2
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.0e-197 692.6 787 61.8
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 3.0e-197 692.6 796 62.6
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 5.2e-197 691.8 792 61.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 8.8e-197 691.0 787 61.4
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 1.5e-196 690.3 833 59.5
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 9.8e-196 687.6 797 60.6
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 1.3e-195 687.2 791 61.4
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 8.3e-195 684.5 794 61.2
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-194 684.1 819 60.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 7.0e-194 681.4 834 58.5
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.2e-193 680.6 788 60.0
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 6.6e-192 674.9 798 59.8
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.6e-190 670.2 874 57.9
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.8e-190 669.5 794 59.9
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 8.0e-190 667.9 805 60.0
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.0e-189 667.5 788 61.7
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 3.0e-189 666.0 805 60.1
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 3.0e-189 666.0 805 59.6
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 6.8e-189 664.8 788 58.8
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.2e-188 664.1 805 59.8
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 2.6e-188 662.9 891 55.9
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 1.3e-187 660.6 784 58.0
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.7e-187 660.2 805 60.0
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.2e-187 659.8 786 58.8
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 3.7e-187 659.1 788 58.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 3.7e-187 659.1 795 60.1
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 3.7e-187 659.1 783 60.0
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.1e-186 657.5 787 58.7
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 1.6e-185 653.7 808 57.8
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.7e-185 652.9 822 57.7
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 7.8e-185 651.4 794 59.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.0e-184 651.0 786 58.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 1.3e-184 650.6 789 57.4
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 3.0e-184 649.4 787 58.1
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.3e-183 645.6 832 48.0
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.2e-182 644.0 682 55.0
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 2.8e-182 642.9 787 57.8
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 3.6e-182 642.5 837 49.5
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.4e-181 640.6 787 57.7
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 3.4e-180 636.0 789 57.2
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 9.8e-180 634.4 792 59.5
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.3e-179 634.0 793 57.0
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.7e-179 633.6 788 57.5
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.9e-179 632.9 774 59.4
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 4.9e-179 632.1 784 59.3
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 2.7e-177 626.3 790 59.7
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.6e-177 625.5 817 55.8
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 8.6e-176 621.3 716 61.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-174 617.1 818 49.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 4.7e-174 615.5 743 59.1
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 4.7e-174 615.5 826 54.5
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 4.1e-170 602.4 784 57.7
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.6e-169 599.0 841 54.3
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 8.6e-168 594.7 792 55.3
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 5.2e-165 585.5 805 54.7
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 5.8e-164 582.0 823 52.6
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.2e-156 557.8 601 53.2
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.1e-154 551.2 843 52.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.3e-151 539.7 1242 40.2
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.6e-150 536.2 735 56.3
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 8.1e-150 535.0 555 54.6
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 4.5e-148 529.3 793 49.1
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 5.3e-133 479.2 722 53.6
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.9e-128 463.0 585 61.5
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.0e-120 438.3 809 47.0
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 1.8e-120 437.6 685 41.6
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.3e-118 431.4 805 45.8
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 5.5e-114 416.0 793 48.0
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 7.2e-114 415.6 797 47.8
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.6e-113 413.3 388 59.0
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 4.4e-103 379.8 494 46.6
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.0e-96 357.1 343 82.2
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 1.6e-92 344.7 425 67.3
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 7.7e-92 342.4 438 46.6
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.5e-90 338.2 335 55.5
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.8e-88 331.3 452 64.2
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 8.8e-88 328.9 346 55.2
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.2e-86 324.3 557 39.9
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.8e-86 323.9 427 66.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 1.5e-79 301.6 205 70.7
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.3e-75 288.5 328 51.5
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.9e-62 243.4 256 56.6
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 5.8e-47 193.4 780 26.7
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 5.1e-43 180.3 435 49.9
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-41 175.6 162 61.1
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 8.1e-41 172.9 280 41.4
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.8e-40 171.8 98 85.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-39 167.5 90 87.8
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-36 158.7 151 57.0
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 7.8e-36 156.4 150 58.0
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.0e-35 156.0 177 53.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.3e-34 149.8 135 62.2
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-33 148.7 154 54.5
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.3e-32 143.7 97 73.2
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-31 141.0 84 83.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 3.0e-27 127.9 130 53.8
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 8.7e-27 126.3 757 23.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-26 124.8 67 83.6
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.6e-25 122.1 158 50.0
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.1e-25 121.7 232 39.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.0e-24 116.3 70 80.0
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-23 114.8 67 85.1
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-22 112.5 61 86.9
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-22 111.3 61 85.2
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-21 109.4 145 47.6
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.4e-21 108.2 154 94.8
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.9e-18 98.6 153 92.2
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.1e-16 92.8 135 47.4
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 5.3e-16 90.5 113 52.2
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 9.0e-16 89.7 89 56.2
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 4.9e-14 84.0 152 42.1
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-13 82.4 60 71.7
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.6e-09 68.9 222 27.9
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 4.8e-09 67.4 91 44.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 9.0e-08 63.2 41 73.2
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 4.5e-07 60.8 31 90.3
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.7e-06 58.9 30 90.0
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 1.7e-06 58.9 31 87.1
BcaB05g22258 Brassica carinata HOM05D004098 ORTHO05D021823 2.2e-06 58.5 31 83.9


User provided reference genes

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