Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 5.4e-181 637.9 407 100.0
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 3.1e-136 489.2 471 69.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.0e-106 390.2 463 62.9
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.9e-102 376.3 478 61.7
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.2e-95 354.4 468 54.3
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 3.6e-92 342.8 470 51.1
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.6e-90 336.7 489 49.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.2e-87 327.8 460 49.8
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 2.7e-87 326.6 478 49.6
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 4.5e-87 325.9 470 51.9
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.1e-85 321.2 476 45.2
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 5.5e-85 318.9 470 50.0
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.6e-84 316.2 475 53.1
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.0e-83 313.2 465 54.4
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 5.7e-82 308.9 502 49.8
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.2e-81 307.0 426 48.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.2e-79 301.2 493 42.8
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.0e-79 300.4 493 42.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.5e-79 299.3 485 47.6
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.9e-79 298.9 466 44.6
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 7.7e-79 298.5 478 51.0
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 2.9e-78 296.6 468 44.0
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.0e-78 295.8 529 45.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 8.6e-78 295.0 478 50.8
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.5e-77 294.3 475 47.4
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 1.9e-77 293.9 502 46.0
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.5e-77 293.5 438 45.9
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.3e-77 293.1 520 46.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.5e-77 292.4 515 43.3
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 5.5e-77 292.4 517 43.7
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.0e-75 286.6 504 45.8
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.0e-75 286.6 477 50.1
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 4.0e-75 286.2 516 43.0
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 8.9e-75 285.0 482 48.1
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.2e-74 284.6 510 48.2
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.0e-74 283.9 515 44.3
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.7e-73 280.8 516 42.2
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.2e-73 280.4 483 42.2
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.4e-72 276.9 540 43.3
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.2e-72 276.6 522 40.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.1e-72 276.2 480 42.1
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 5.4e-72 275.8 473 45.2
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 4.5e-71 272.7 468 47.0
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.9e-71 272.3 516 43.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 5.9e-71 272.3 512 43.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 7.8e-71 271.9 462 47.0
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-70 271.2 461 46.6
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.9e-70 270.0 413 46.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 3.9e-70 269.6 504 40.3
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 6.6e-70 268.9 450 42.0
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 8.6e-70 268.5 548 42.5
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-69 267.3 491 45.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.9e-69 267.3 478 45.2
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 7.3e-69 265.4 471 46.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.2e-68 264.6 540 41.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 2.1e-68 263.8 500 46.2
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.8e-68 263.5 481 40.5
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 3.6e-68 263.1 456 47.6
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 6.1e-68 262.3 488 40.4
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.0e-68 261.9 478 45.0
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.0e-67 261.5 476 50.4
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.0e-67 261.5 447 44.5
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 5.2e-67 259.2 457 54.0
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.2e-66 258.1 452 45.6
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 4.4e-66 256.1 462 42.4
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 7.5e-66 255.4 469 45.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 6.4e-65 252.3 455 48.1
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.1e-64 249.6 478 43.9
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 4.1e-64 249.6 489 44.6
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 5.4e-64 249.2 496 39.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.2e-63 248.1 558 36.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 6.0e-63 245.7 520 38.5
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.3e-62 244.6 517 38.7
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-62 244.6 512 38.1
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.7e-62 244.2 462 40.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.5e-61 240.4 469 40.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 4.3e-61 239.6 530 37.5
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 7.3e-61 238.8 463 45.1
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.2e-60 238.0 459 48.8
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.6e-60 237.7 457 41.4
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 2.1e-60 237.3 458 48.3
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 3.6e-60 236.5 443 43.6
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.6e-60 236.5 527 43.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.1e-59 235.0 459 48.1
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.1e-59 235.0 459 39.2
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 1.4e-59 234.6 450 42.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.3e-59 233.8 460 41.1
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 8.9e-59 231.9 449 45.7
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.0e-58 230.7 450 40.7
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 4.4e-58 229.6 468 42.3
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.4e-58 229.6 457 38.3
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 2.9e-57 226.9 444 40.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 3.2e-56 223.4 540 44.8
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 7.1e-56 222.2 512 35.5
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.1e-55 220.7 447 43.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 7.8e-55 218.8 452 41.4
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.3e-54 218.0 482 40.7
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 2.0e-50 204.1 416 47.8
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 2.6e-50 203.8 470 45.3
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 9.9e-50 201.8 483 39.8
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.3e-49 201.4 436 45.4
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 7.1e-48 195.7 459 39.7
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.2e-47 194.9 433 37.6
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.7e-46 191.0 445 39.3
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 3.9e-46 189.9 495 35.2
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 5.2e-43 179.5 124 74.2
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 6.8e-43 179.1 124 75.0
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 9.9e-42 175.3 124 73.4
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.3e-41 174.9 124 72.6
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 4.9e-41 172.9 384 40.6
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 6.4e-41 172.6 519 36.4
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.1e-40 169.1 376 37.5
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-39 167.9 124 70.2
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 1.6e-39 167.9 124 71.0
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 3.3e-37 160.2 398 35.9
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.3e-37 159.8 525 36.0
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 5.6e-37 159.5 447 38.9
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 6.9e-35 152.5 485 34.2
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 3.4e-34 150.2 465 32.0
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.6e-34 149.1 286 44.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.4e-32 144.1 106 70.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 5.4e-32 142.9 387 43.2
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 4.8e-28 129.8 482 35.1
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 7.6e-26 122.5 66 92.4
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.8e-22 111.3 376 31.6
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.8e-22 111.3 310 33.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-20 104.8 84 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.5e-16 90.9 358 30.7
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 4.2e-16 90.1 167 38.9
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 7.1e-16 89.4 116 43.1
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 9.3e-16 89.0 365 30.1
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.2e-15 88.6 52 86.5
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.6e-15 88.2 386 29.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.6e-15 88.2 386 29.0
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 3.0e-14 84.0 46 89.1
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 4.3e-13 80.1 49 75.5
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 7.4e-13 79.3 121 41.3
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 9.0e-11 72.4 113 38.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.9e-09 67.4 414 33.1


User provided reference genes

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