Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 3.9e-107 392.5 401 100.0
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 7.6e-79 298.5 401 86.3
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 4.8e-65 252.7 393 86.8
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 9.1e-48 195.3 396 38.1
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 2.0e-47 194.1 396 71.5
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 2.5e-45 187.2 123 78.0
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.6e-44 184.5 400 38.2
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 5.7e-42 176.0 396 62.9
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 5.7e-42 176.0 396 62.9
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 2.8e-41 173.7 122 75.4
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 5.3e-40 169.5 424 38.4
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 9.1e-40 168.7 122 74.6
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 2.0e-39 167.5 122 69.7
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 2.7e-39 167.2 122 73.0
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 4.5e-39 166.4 418 38.8
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 5.9e-39 166.0 427 38.6
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 7.7e-39 165.6 396 42.4
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 2.2e-38 164.1 424 37.3
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 6.5e-38 162.5 423 37.4
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 5.5e-37 159.5 124 70.2
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 9.4e-37 158.7 122 72.1
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 9.4e-37 158.7 119 70.6
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 9.4e-37 158.7 122 73.0
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 1.2e-36 158.3 352 38.9
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 2.7e-36 157.1 118 70.3
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 2.7e-36 157.1 125 68.8
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 3.6e-36 156.8 123 69.9
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 4.7e-36 156.4 122 73.0
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 4.7e-36 156.4 122 72.1
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 8.0e-36 155.6 123 69.1
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 8.0e-36 155.6 122 69.7
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.4e-35 154.8 120 69.2
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 5.2e-35 152.9 122 71.3
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 5.2e-35 152.9 399 34.8
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 8.8e-35 152.1 121 67.8
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 1.2e-34 151.8 395 35.2
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 2.0e-34 151.0 127 67.7
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 4.4e-34 149.8 124 69.4
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 4.4e-34 149.8 122 70.5
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 9.8e-34 148.7 147 59.9
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 6.3e-33 146.0 121 67.8
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 1.8e-32 144.4 125 64.8
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 4.1e-32 143.3 109 73.4
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 5.4e-32 142.9 120 65.8
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 7.0e-32 142.5 142 59.2
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 7.0e-32 142.5 396 35.1
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 7.0e-32 142.5 396 33.8
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 9.1e-32 142.1 126 63.5
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.6e-31 141.4 123 66.7
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 2.7e-31 140.6 123 63.4
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 2.7e-31 140.6 402 53.5
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 5.9e-31 139.4 125 60.8
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 5.9e-31 139.4 119 64.7
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 1.7e-30 137.9 90 76.7
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 2.3e-30 137.5 132 61.4
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 2.9e-30 137.1 103 72.8
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 2.9e-30 137.1 153 54.9
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 3.8e-30 136.7 108 65.7
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 5.0e-30 136.3 119 63.0
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 6.5e-30 136.0 119 63.0
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 8.6e-30 135.6 123 64.2
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 1.1e-29 135.2 122 59.8
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 1.5e-29 134.8 122 63.9
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.9e-29 134.4 90 73.3
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 2.5e-29 134.0 96 74.0
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 3.2e-29 133.7 119 63.9
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 3.2e-29 133.7 98 73.5
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 7.2e-29 132.5 122 62.3
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 7.2e-29 132.5 399 34.6
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 3.6e-28 130.2 125 61.6
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 1.0e-27 128.6 119 61.3
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 1.4e-27 128.3 124 61.3
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 1.8e-27 127.9 94 69.1
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 2.3e-27 127.5 72 83.3
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 3.0e-27 127.1 80 77.5
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 5.2e-27 126.3 82 76.8
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 5.2e-27 126.3 406 33.5
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 6.8e-27 125.9 124 59.7
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 8.8e-27 125.6 93 71.0
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 2.0e-26 124.4 107 65.4
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 2.6e-26 124.0 78 78.2
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 4.4e-26 123.2 124 59.7
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 4.4e-26 123.2 81 75.3
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 4.4e-26 123.2 135 54.8
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 5.7e-26 122.9 98 69.4
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 7.5e-26 122.5 81 75.3
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 2.2e-25 120.9 124 57.3
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 2.8e-25 120.6 121 59.5
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 6.3e-25 119.4 121 58.7
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 6.3e-25 119.4 167 46.7
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.1e-24 118.6 72 77.8
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 1.4e-24 118.2 122 55.7
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 1.8e-24 117.9 121 57.9
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 1.8e-24 117.9 121 57.9
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 1.8e-24 117.9 118 59.3
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 4.1e-24 116.7 119 58.8
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 4.1e-24 116.7 119 58.8
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 4.1e-24 116.7 139 55.4
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 7.0e-24 115.9 78 74.4
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 2.0e-23 114.4 137 54.0
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 1.7e-22 111.3 72 75.0
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 2.9e-22 110.5 414 31.6
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 3.8e-22 110.2 409 31.5
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 2.5e-21 107.5 96 60.4
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 4.3e-21 106.7 64 79.7
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 4.3e-21 106.7 64 79.7
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 7.3e-21 105.9 84 65.5
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 1.6e-20 104.8 123 52.8
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 2.1e-20 104.4 76 68.4
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 1.4e-19 101.7 138 50.0
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 8.9e-19 99.0 121 49.6
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 3.4e-18 97.1 67 74.6
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 1.7e-17 94.7 118 50.8
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 8.3e-17 92.4 51 80.4
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 2.4e-16 90.9 58 69.0
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.4e-16 90.9 58 69.0
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 3.2e-16 90.5 124 47.6
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 3.2e-16 90.5 53 83.0
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 5.4e-16 89.7 58 67.2
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 5.4e-16 89.7 50 82.0
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 7.0e-16 89.4 113 45.1
Actinidia10719 Actinidia chinensis HOM05D005148 ORTHO05D006218 1.2e-15 88.6 370 32.7
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.0e-15 87.8 58 67.2
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 3.9e-14 83.6 126 47.6
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 3.9e-14 83.6 63 68.3
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 5.6e-13 79.7 55 65.5
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 1.8e-11 74.7 90 51.1
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 5.8e-10 69.7 38 76.3
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 7.5e-10 69.3 77 45.5
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 4.9e-09 66.6 107 45.8
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 6.4e-09 66.2 37 81.1
RcHm_v2.0_Chr3g0472301 Rosa chinensis HOM05D000874 ORTHO05D001049 2.4e-08 64.3 65 58.5
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.2e-07 62.0 45 66.7
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 7.8e-07 59.3 64 48.4
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 5.0e-06 56.6 48 58.3


User provided reference genes

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