Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 1.1e-81 306.6 163 100.0
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.2e-30 137.1 129 65.1
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 1.5e-17 93.6 161 44.1
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 4.4e-17 92.0 156 44.9
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 9.8e-17 90.9 154 46.1
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 8.3e-16 87.8 163 43.6
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 1.1e-15 87.4 144 44.4
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 1.4e-15 87.0 144 45.1
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 3.2e-15 85.9 149 44.3
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-13 80.9 149 43.6
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.0e-13 80.9 149 43.6
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 1.6e-11 73.6 127 39.4
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 4.0e-10 68.9 55 60.0
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-10 68.9 55 60.0
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-10 68.9 55 60.0
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-10 68.9 55 60.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 4.0e-10 68.9 55 60.0
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 5.2e-10 68.6 56 58.9
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 6.8e-10 68.2 56 58.9
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 8.9e-10 67.8 55 58.2
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.9e-10 67.8 127 39.4
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.2e-09 67.4 56 58.9
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.2e-09 67.4 55 58.2
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 1.5e-09 67.0 55 58.2
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 1.5e-09 67.0 55 58.2
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.5e-09 67.0 56 58.9
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.5e-09 67.0 56 58.9
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.5e-09 67.0 56 57.1
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 2.0e-09 66.6 55 58.2
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 2.6e-09 66.2 55 58.2
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 2.6e-09 66.2 54 59.3
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 2.6e-09 66.2 56 57.1
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.4e-09 65.9 56 55.4
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.4e-09 65.9 56 55.4
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 3.4e-09 65.9 59 57.6
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 3.4e-09 65.9 53 58.5
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 4.4e-09 65.5 61 57.4
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 5.8e-09 65.1 55 56.4
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.8e-09 65.1 55 56.4
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 5.8e-09 65.1 55 56.4
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 7.5e-09 64.7 55 56.4
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 7.5e-09 64.7 56 55.4
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 7.5e-09 64.7 61 55.7
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 9.8e-09 64.3 53 56.6
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 9.8e-09 64.3 58 55.2
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 9.8e-09 64.3 55 56.4
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 9.8e-09 64.3 53 58.5
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.8e-09 64.3 59 57.6
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 9.8e-09 64.3 59 57.6
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 9.8e-09 64.3 54 55.6
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 9.8e-09 64.3 59 59.3
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 1.3e-08 63.9 56 60.7
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 1.3e-08 63.9 55 54.5
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.3e-08 63.9 47 59.6
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.3e-08 63.9 67 52.2
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.3e-08 63.9 57 57.9
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.3e-08 63.9 57 57.9
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 1.3e-08 63.9 55 54.5
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 1.7e-08 63.5 55 54.5
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 2.9e-08 62.8 56 58.9
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 2.9e-08 62.8 57 56.1
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 3.7e-08 62.4 58 60.3
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 3.7e-08 62.4 55 56.4
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 3.7e-08 62.4 61 55.7
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 6.4e-08 61.6 57 54.4
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 6.4e-08 61.6 56 57.1
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 8.3e-08 61.2 81 53.1
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 8.3e-08 61.2 58 56.9
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.3e-08 61.2 59 55.9
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.3e-08 61.2 59 55.9
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.3e-08 61.2 59 55.9
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.1e-07 60.8 57 54.4
Eucgr.F01166 Eucalyptus grandis HOM05D005020 ORTHO05D006017 1.1e-07 60.8 127 37.0
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 1.1e-07 60.8 58 56.9
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 1.1e-07 60.8 59 54.2
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 1.1e-07 60.8 58 56.9
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.4e-07 60.5 58 56.9
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 1.4e-07 60.5 58 56.9
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 1.9e-07 60.1 49 61.2
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 2.4e-07 59.7 109 39.4
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.4e-07 59.7 58 56.9
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 2.4e-07 59.7 56 53.6
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.2e-07 59.3 58 55.2
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.2e-07 59.3 58 55.2
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.2e-07 59.3 58 55.2
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 3.2e-07 59.3 58 55.2
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 3.2e-07 59.3 49 61.2
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 7.1e-07 58.2 54 53.7
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 7.1e-07 58.2 55 49.1
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 1.2e-06 57.4 57 50.9
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 1.2e-06 57.4 105 45.7
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 1.2e-06 57.4 57 49.1
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 2.7e-06 56.2 59 47.5
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.7e-06 56.2 60 50.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.5e-06 55.8 48 56.2
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 4.6e-06 55.5 72 47.2
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 4.6e-06 55.5 58 51.7
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 6.0e-06 55.1 48 52.1
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 7.8e-06 54.7 57 54.4


User provided reference genes

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