Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 1.6e-97 359.4 180 100.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.4e-88 329.7 181 93.4
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 6.9e-72 274.2 186 81.2
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.7e-68 262.3 183 77.6
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 6.1e-68 261.2 183 77.6
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.2e-62 242.7 184 71.7
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 3.8e-62 241.9 171 74.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 8.5e-62 240.7 162 77.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.9e-61 239.6 176 73.9
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 3.6e-60 235.3 172 74.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.8e-59 233.0 182 70.3
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.8e-59 233.0 182 70.3
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 3.9e-59 231.9 170 72.9
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 3.9e-59 231.9 170 72.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 5.1e-59 231.5 172 72.7
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 1.5e-58 229.9 171 73.1
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.0e-58 229.6 161 73.9
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.0e-58 229.6 170 72.4
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 1.7e-57 226.5 136 83.1
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.7e-57 226.5 185 68.1
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 4.8e-57 224.9 183 66.7
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 8.2e-57 224.2 144 79.9
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.1e-56 223.8 185 68.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 5.3e-56 221.5 173 68.2
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 6.9e-56 221.1 184 67.9
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 9.1e-56 220.7 180 66.1
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 1.5e-55 219.9 183 65.0
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 2.0e-55 219.5 175 69.7
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 2.6e-55 219.2 168 70.8
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.4e-55 218.8 184 66.3
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.4e-55 218.8 141 78.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.0e-54 217.2 167 70.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.7e-54 216.5 186 64.5
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.2e-54 216.1 158 72.8
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 2.2e-54 216.1 163 68.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.8e-54 215.3 172 68.0
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 8.5e-54 214.2 174 69.0
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.1e-53 213.8 170 68.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.4e-53 213.4 140 79.3
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-53 213.4 154 73.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.9e-53 213.0 170 70.6
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.9e-53 213.0 138 79.7
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 3.2e-53 212.2 172 68.6
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.2e-53 212.2 153 75.2
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 5.5e-53 211.5 172 69.2
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 7.2e-53 211.1 174 67.8
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.2e-52 210.3 160 70.6
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.1e-52 209.5 141 77.3
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 4.7e-52 208.4 152 72.4
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 6.1e-52 208.0 139 77.7
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 6.1e-52 208.0 161 70.8
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 6.1e-52 208.0 141 76.6
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.4e-51 206.8 141 75.9
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.8e-51 206.5 170 67.1
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.0e-51 205.7 159 69.2
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 3.0e-51 205.7 171 67.3
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.9e-51 205.3 171 67.8
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.2e-51 204.9 170 67.1
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 5.2e-51 204.9 173 64.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 5.2e-51 204.9 158 69.0
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 6.7e-51 204.5 176 64.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 8.8e-51 204.1 161 69.6
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 1.1e-50 203.8 141 73.8
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.5e-50 203.4 139 75.5
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.5e-50 203.4 154 70.8
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.5e-50 203.4 175 64.0
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 2.0e-50 203.0 154 70.8
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.0e-50 203.0 154 70.8
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 3.3e-50 202.2 181 64.6
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 3.3e-50 202.2 152 71.7
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 3.3e-50 202.2 156 68.6
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 4.4e-50 201.8 165 64.8
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.7e-50 201.4 119 84.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 5.7e-50 201.4 172 66.9
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 5.7e-50 201.4 163 66.9
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 5.7e-50 201.4 174 63.8
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 5.7e-50 201.4 170 65.9
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 5.7e-50 201.4 170 65.9
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 9.7e-50 200.7 166 66.9
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 9.7e-50 200.7 170 65.9
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.3e-49 200.3 165 63.6
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.3e-49 200.3 165 63.6
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.2e-49 199.5 176 64.2
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 2.8e-49 199.1 178 64.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 4.8e-49 198.4 167 62.9
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 8.2e-49 197.6 165 63.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.1e-48 197.2 142 70.4
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.8e-48 196.4 167 65.3
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.8e-48 196.4 116 84.5
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.4e-48 196.1 158 65.8
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.1e-48 195.7 169 63.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.1e-48 195.7 169 62.7
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 4.1e-48 195.3 165 61.8
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.1e-48 195.3 171 64.3
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 5.3e-48 194.9 167 67.7
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 7.0e-48 194.5 169 62.7
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.6e-47 193.4 158 66.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.6e-47 192.6 152 67.1
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.5e-47 192.2 201 58.7
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 4.5e-47 191.8 169 62.1
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 5.9e-47 191.4 158 65.8
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 5.9e-47 191.4 145 66.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.9e-47 191.4 157 65.6
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.3e-46 190.3 155 65.8
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.3e-46 190.3 149 69.8
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.2e-46 189.5 137 71.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.9e-46 189.1 149 67.8
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 6.5e-46 188.0 106 85.8
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.5e-46 187.6 118 76.3
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 8.5e-46 187.6 105 86.7
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-45 186.8 158 65.8
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.9e-45 186.4 180 62.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.5e-45 186.0 159 64.8
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 4.2e-45 185.3 122 73.0
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 4.2e-45 185.3 224 52.7
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 9.4e-45 184.1 130 72.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.7e-44 182.6 170 61.8
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 4.7e-44 181.8 105 86.7
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 4.7e-44 181.8 129 72.1
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 8.0e-44 181.0 129 72.9
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 3.0e-43 179.1 155 60.6
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 4.0e-43 178.7 163 62.6
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.8e-43 177.6 130 71.5
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.0e-42 176.4 132 69.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 2.6e-42 176.0 121 72.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.7e-42 174.9 158 60.1
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.7e-41 173.3 150 60.7
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 4.8e-41 171.8 158 60.1
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.4e-40 170.2 201 51.2
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.4e-40 169.5 160 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.1e-40 167.5 159 59.7
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 9.1e-40 167.5 135 65.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 7.7e-39 164.5 138 61.6
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 5.0e-38 161.8 121 71.1
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 8.5e-38 161.0 118 64.4
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 8.5e-38 161.0 107 75.7
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 1.5e-37 160.2 102 73.5
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-37 159.5 154 60.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.5e-37 159.5 154 60.4
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.2e-37 159.1 125 66.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-36 157.1 154 59.7
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 4.7e-36 155.2 95 76.8
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.1e-36 154.8 172 54.7
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 1.8e-35 153.3 115 69.6
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 8.3e-33 144.4 126 62.7
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 4.1e-32 142.1 118 59.3
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.3e-30 136.3 107 66.4
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.9e-30 136.0 76 88.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 1.5e-26 123.6 133 51.1
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.0e-22 110.9 58 89.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 3.3e-21 105.9 99 61.6
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 4.3e-21 105.5 74 77.0
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.0e-19 100.9 120 50.8
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 2.3e-19 99.8 58 84.5
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 4.0e-19 99.0 133 51.1
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 5.2e-19 98.6 74 66.2
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 8.9e-19 97.8 119 42.0
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 4.4e-18 95.5 75 61.3
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 3.7e-17 92.4 75 60.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 4.9e-17 92.0 75 60.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.7e-14 83.6 47 80.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 6.2e-12 75.1 126 37.3
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.2e-08 62.8 39 71.8
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 5.4e-08 62.0 151 34.4
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 2.0e-07 60.1 145 30.3


User provided reference genes

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