Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 0.0e+00 2110.9 1140 100.0
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1204.1 764 84.2
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 0.0e+00 1167.9 625 98.4
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1148.7 1336 56.7
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1136.7 778 77.9
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1080.5 766 74.9
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1078.2 781 73.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 7.8e-312 1073.5 770 75.7
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 9.4e-311 1070.5 767 74.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.2e-310 1070.1 766 74.5
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 2.2e-309 1065.8 766 74.4
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.5e-308 1063.1 769 76.1
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.5e-308 1063.1 757 75.3
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 7.2e-308 1060.8 772 73.4
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.1e-307 1059.3 774 73.8
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.0e-306 1057.0 764 74.1
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 4.0e-306 1055.0 777 74.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 8.8e-306 1053.9 765 73.6
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 3.7e-304 1048.5 748 74.7
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 3.7e-304 1048.5 780 72.3
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 1.8e-303 1046.2 766 73.2
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.0e-303 1044.3 778 72.9
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 9.1e-303 1043.9 777 72.7
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 1.0e-301 1040.4 779 71.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 2.9e-301 1038.9 773 74.4
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 6.5e-301 1037.7 778 72.8
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 6.5e-301 1037.7 772 73.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 3.2e-300 1035.4 777 72.6
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 7.2e-300 1034.2 775 72.6
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 2.7e-299 1032.3 759 72.2
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.8e-298 1029.6 777 71.7
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 5.2e-298 1028.1 726 74.2
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 5.2e-298 1028.1 780 70.4
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 6.8e-298 1027.7 761 72.5
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 1.2e-297 1026.9 768 71.1
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 3.7e-296 1021.9 771 70.9
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 2.0e-294 1016.1 703 76.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 1.7e-293 1013.1 710 74.5
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 1.7e-293 1013.1 760 71.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 8.6e-293 1010.7 769 70.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 9.5e-292 1007.3 764 71.2
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 2.1e-291 1006.1 710 73.8
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 3.6e-291 1005.4 714 74.5
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 4.0e-290 1001.9 764 69.2
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 5.2e-290 1001.5 764 70.9
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.8e-290 1001.1 815 67.0
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 1.7e-288 996.5 764 70.3
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 4.9e-288 995.0 816 67.3
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 1.4e-287 993.4 787 69.4
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 4.1e-287 991.9 687 75.5
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 7.0e-287 991.1 1407 46.5
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 9.2e-287 990.7 747 69.7
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.7e-285 986.5 772 70.3
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 3.8e-285 985.3 780 71.0
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 5.0e-285 984.9 780 70.9
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 8.6e-285 984.2 716 73.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 3.6e-283 978.8 694 74.4
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 3.6e-283 978.8 759 68.6
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 4.9e-280 968.4 769 68.4
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 6.4e-280 968.0 723 72.3
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.0e-277 960.7 778 67.9
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 6.6e-277 958.0 721 71.7
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.1e-276 957.2 747 69.5
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.5e-276 956.8 753 70.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 9.5e-276 954.1 772 66.8
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 9.5e-276 954.1 772 66.8
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 1.2e-275 953.7 782 69.3
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 8.0e-275 951.0 784 69.1
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 1.2e-273 947.2 766 66.2
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 5.8e-273 944.9 784 69.3
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.3e-272 943.7 783 68.7
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.3e-272 943.7 767 67.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 2.2e-272 943.0 783 68.5
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 8.3e-272 941.0 770 66.6
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.9e-271 939.9 780 68.6
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.7e-270 936.0 715 70.5
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 6.0e-270 934.9 779 68.9
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 7.8e-270 934.5 779 68.9
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.7e-269 933.3 778 69.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.7e-269 933.3 778 69.0
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.0e-269 932.6 778 68.9
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 6.6e-269 931.4 778 67.9
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 1.9e-268 929.9 714 69.3
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 5.6e-268 928.3 644 75.6
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 9.5e-268 927.5 769 66.1
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.6e-267 926.8 718 68.2
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 4.7e-267 925.2 784 67.6
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 2.3e-266 922.9 786 67.2
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 5.8e-265 918.3 769 66.8
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 4.1e-263 912.1 765 65.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 7.8e-262 907.9 744 66.0
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.1e-255 887.5 726 65.4
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 3.2e-255 885.9 774 64.0
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.3e-253 879.8 720 67.2
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 9.6e-252 874.4 688 69.2
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.8e-250 870.2 753 64.1
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.3e-244 849.4 740 63.4
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-220 771.2 541 73.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.3e-220 769.2 541 73.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.3e-200 704.5 717 52.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.2e-200 703.7 749 51.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.7e-192 677.6 530 63.0
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.2e-191 673.3 699 53.6
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.1e-190 669.1 723 50.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 4.5e-185 652.9 702 52.4
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 4.2e-183 646.4 524 61.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.7e-179 634.4 524 60.7
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.2e-171 607.4 518 59.1
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.3e-163 581.6 414 72.0
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 3.3e-151 540.4 317 83.6
Cfa012221 Carpinus fangiana HOM05D008679 ORTHO05D010804 2.3e-144 517.7 472 68.6
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.1e-141 508.8 414 60.9
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.9e-135 488.0 392 66.3
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.5e-98 363.6 295 65.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.1e-96 357.1 274 65.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.9e-90 338.6 258 66.7
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.4e-85 321.6 667 33.6
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 2.9e-83 314.7 472 40.0
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 8.8e-80 303.1 586 39.6
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 8.2e-78 296.6 278 61.9
QL12p032781 Quercus lobata HOM05D008679 ORTHO05D010804 5.4e-69 267.3 525 45.0
CiPaw.11G134300 Carya illinoinensis HOM05D008679 ORTHO05D010804 1.5e-58 232.6 356 51.4
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.2e-52 213.0 570 29.5
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.6e-49 202.6 342 41.8
Dinv38933 Davidia involucrata HOM05D008679 ORTHO05D010804 3.7e-46 191.4 399 35.1
Prupe.5G101200 Prunus persica HOM05D008679 ORTHO05D010804 3.4e-39 168.3 487 38.6
TAR375G0988 Trochodendron aralioides HOM05D008679 ORTHO05D010804 1.9e-37 162.5 406 32.8
Actinidia14568 Actinidia chinensis HOM05D008679 ORTHO05D010804 1.0e-35 156.8 398 32.9
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.9e-34 152.5 157 57.3
TAR374G0287 Trochodendron aralioides HOM05D008679 ORTHO05D010804 3.3e-34 151.8 405 31.4
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.8e-33 148.7 78 84.6
Potri.001G103200 Populus trichocarpa HOM05D008679 ORTHO05D010804 8.1e-33 147.1 500 29.4
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.3e-32 145.6 127 63.0
Hma1.2p1_0896F.1_g234080 Hydrangea macrophylla HOM05D008679 ORTHO05D010804 2.3e-32 145.6 409 31.8
Actinidia01999 Actinidia chinensis HOM05D008679 ORTHO05D010804 6.8e-32 144.1 407 31.9
Thecc.03G280000 Theobroma cacao HOM05D008679 ORTHO05D010804 8.9e-32 143.7 473 37.6
Duzib205G1921 Durio zibethinus HOM05D008679 ORTHO05D010804 5.8e-31 141.0 498 35.5
Ciclev10019505m.g Citrus clementina HOM05D008679 ORTHO05D010804 1.3e-30 139.8 476 31.1
MD06G1085200 Malus domestica HOM05D008679 ORTHO05D010804 2.9e-30 138.7 416 37.5
Potri.003G128400 Populus trichocarpa HOM05D008679 ORTHO05D010804 2.4e-29 135.6 497 31.8
Lj2P184T43 Lonicera japonica HOM05D008679 ORTHO05D010804 2.1e-28 132.5 390 29.2
Duzib084G0348 Durio zibethinus HOM05D008679 ORTHO05D010804 1.0e-27 130.2 497 29.4
RcHm_v2.0_Chr7g0197481 Rosa chinensis HOM05D008679 ORTHO05D010804 1.0e-27 130.2 503 34.4
Rhsim02G0231800 Rhododendron simsii HOM05D008679 ORTHO05D010804 1.3e-27 129.8 420 31.4
TWI15G0527 Tripterygium wilfordii HOM05D008679 ORTHO05D010804 6.6e-27 127.5 470 28.3
Sabra01G0077900 Salix brachista HOM05D008679 ORTHO05D010804 7.3e-26 124.0 515 32.2
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.2e-22 112.5 136 48.5
Manes.02G019900 Manihot esculenta HOM05D008679 ORTHO05D010804 2.9e-22 112.1 467 33.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.7e-20 105.5 111 52.3
FAN08G1707 Fragaria x ananassa HOM05D008679 ORTHO05D010804 7.8e-20 104.0 510 32.9
Gohir.D12G231200 Gossypium hirsutum HOM05D008679 ORTHO05D010804 1.0e-19 103.6 477 27.0
Gorai.008G247400 Gossypium raimondii HOM05D008679 ORTHO05D010804 3.0e-19 102.1 477 27.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 8.7e-19 100.5 49 87.8
COL.COLO4_34476 Corchorus olitorius HOM05D008679 ORTHO05D010804 1.9e-18 99.4 457 28.2
FAN18G1823 Fragaria x ananassa HOM05D008679 ORTHO05D010804 1.9e-18 99.4 179 46.9
Dinv37632 Davidia involucrata HOM05D008679 ORTHO05D010804 7.3e-18 97.4 408 27.5
FvH4_5g02611 Fragaria vesca HOM05D008679 ORTHO05D010804 9.6e-18 97.1 510 31.8
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.8e-17 95.5 103 50.5
FAN04G2302 Fragaria x ananassa HOM05D008679 ORTHO05D010804 1.8e-16 92.8 510 31.6
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.3e-16 91.3 165 38.2
Lj2C0T7 Lonicera japonica HOM05D008679 ORTHO05D010804 4.5e-15 88.2 167 36.5
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 3.8e-14 85.1 49 73.5
Gohir.A12G230100 Gossypium hirsutum HOM05D008679 ORTHO05D010804 6.4e-14 84.3 291 29.9
Cpa.g.sc74.7 Carica papaya HOM05D008679 ORTHO05D010804 3.2e-13 82.0 459 26.8
Nn1g01544 Nelumbo nucifera HOM05D008679 ORTHO05D010804 5.4e-13 81.3 181 37.0
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.0e-11 77.0 74 58.1
PRCOL_00003060 Prasinoderma coloniale HOM05D008474 ORTHO05D010618 1.1e-10 73.6 373 24.1
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 1.9e-10 72.8 66 60.6
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 1.9e-10 72.8 41 80.5
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.1e-09 69.3 401 24.9
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 6.9e-08 64.3 80 45.0
Oeu007747.1 Olea europaea HOM05D008679 ORTHO05D010804 1.2e-07 63.5 192 31.2
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 4.5e-07 61.6 340 24.1
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 4.5e-07 61.6 253 24.9
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 1.7e-06 59.7 276 26.1
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 2.9e-06 58.9 357 23.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 3.8e-06 58.5 85 40.0
SGA_v2.0_scaffold360G49893 Striga asiatica HOM05D033559 ORTHO05D000309 6.4e-06 57.8 175 29.1


User provided reference genes

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