Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 7.0e-237 823.5 410 100.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 6.0e-172 607.8 309 96.8
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.3e-155 553.5 364 76.4
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.0e-128 461.5 386 62.4
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 5.7e-122 441.8 386 60.9
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 7.4e-122 441.4 370 58.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 2.6e-119 433.0 368 59.0
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 8.5e-118 427.9 389 59.6
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 2.5e-117 426.4 386 56.7
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 8.0e-116 421.4 365 60.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 1.5e-114 417.2 364 58.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 4.4e-114 415.6 366 60.1
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 5.7e-114 415.2 406 56.4
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 9.8e-114 414.5 399 53.9
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.4e-112 409.8 357 58.3
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 9.1e-112 407.9 368 58.2
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 1.2e-111 407.5 365 58.6
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 1.0e-110 404.4 365 57.8
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 2.9e-110 402.9 365 57.5
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 4.2e-109 399.1 365 55.3
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 5.7e-106 388.7 369 55.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.1e-104 382.9 389 52.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.2e-103 380.9 392 51.5
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.6e-103 380.6 343 58.0
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.2e-100 370.9 363 53.7
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 1.6e-100 370.5 367 54.2
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.3e-99 366.7 367 52.9
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 1.2e-98 364.4 369 52.8
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 1.2e-98 364.4 369 53.9
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 7.5e-98 361.7 369 53.4
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 1.3e-97 360.9 364 53.8
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 1.1e-96 357.8 366 51.9
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.4e-96 357.5 369 51.2
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 3.2e-96 356.3 366 51.9
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 5.4e-96 355.5 364 50.0
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 7.0e-96 355.1 366 52.2
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 1.6e-95 354.0 369 51.8
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.0e-95 353.6 394 49.5
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 5.9e-95 352.1 370 51.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 5.0e-94 349.0 369 51.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 5.0e-94 349.0 369 50.9
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 6.6e-94 348.6 369 50.1
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 1.5e-93 347.4 369 51.5
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 1.5e-93 347.4 402 48.5
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 1.5e-93 347.4 366 51.1
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 4.7e-92 342.4 369 50.7
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.0e-92 341.7 377 48.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.4e-91 340.9 369 48.5
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 1.4e-91 340.9 371 50.4
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 8.9e-91 338.2 364 50.8
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 4.9e-89 332.4 375 48.3
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.1e-88 331.3 366 47.5
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 5.4e-88 328.9 364 50.8
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 9.2e-88 328.2 364 50.0
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.7e-87 326.6 364 48.6
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 1.0e-86 324.7 386 47.4
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.0e-86 324.7 369 48.2
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.0e-86 323.2 370 51.1
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.9e-86 322.8 369 45.0
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 8.6e-86 321.6 367 47.7
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.9e-85 320.5 369 46.9
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 3.3e-85 319.7 364 48.6
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 3.3e-85 319.7 369 50.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 4.3e-85 319.3 378 47.1
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 7.3e-85 318.5 364 49.2
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 9.5e-85 318.2 365 47.9
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 1.2e-84 317.8 367 48.8
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 1.6e-84 317.4 368 47.8
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.6e-84 317.4 384 46.6
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 6.2e-84 315.5 364 47.8
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.4e-83 314.3 378 46.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 6.8e-83 312.0 370 47.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 2.0e-82 310.5 370 46.8
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 2.0e-82 310.5 370 46.8
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 4.4e-82 309.3 366 48.4
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 5.4e-80 302.4 381 45.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 4.4e-74 282.7 366 43.7
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 4.1e-72 276.2 366 42.1
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 1.2e-63 248.1 389 38.6
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.8e-63 245.4 391 39.9
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 2.3e-62 243.8 400 38.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 3.6e-60 236.5 187 61.5
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.4e-59 234.6 362 37.8
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 6.6e-54 215.7 276 44.2
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.1e-48 198.4 396 32.8
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 4.6e-47 193.0 370 34.6
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.3e-45 186.8 225 48.9
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 2.9e-41 173.7 363 32.8
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 9.0e-35 152.1 130 61.5
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 4.2e-32 143.3 395 27.8
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 2.1e-31 141.0 181 47.5
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 4.8e-20 103.2 61 72.1
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 6.3e-20 102.8 111 49.5
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 2.5e-16 90.9 216 29.6
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 7.2e-16 89.4 205 32.7
C05p27230 Brassica napus HOM05D003893 ORTHO05D005167 1.8e-14 84.7 192 33.9
BolC6t38634H Brassica oleracea HOM05D003893 ORTHO05D021800 7.7e-10 69.3 160 32.5
BolC4t23418H Brassica oleracea HOM05D003893 ORTHO05D021800 2.2e-09 67.8 171 31.0
BolC5t31436H Brassica oleracea HOM05D003893 ORTHO05D021800 1.1e-08 65.5 158 29.7
BcaC05g26842 Brassica carinata HOM05D003893 ORTHO05D021800 3.2e-08 63.9 183 28.4


User provided reference genes

Program Settings