Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.9e-157 558.5 285 100.0
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 4.1e-135 485.0 285 90.2
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 3.3e-129 465.3 285 85.3
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.8e-128 462.2 285 82.8
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 3.7e-128 461.8 285 82.8
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.8e-127 459.5 285 81.8
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 1.2e-126 456.8 285 80.7
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.2e-126 456.8 285 81.4
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 2.7e-126 455.7 283 81.3
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 5.9e-126 454.5 285 82.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.0e-125 453.8 285 82.5
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.3e-125 453.4 285 81.4
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 1.3e-125 453.4 283 81.3
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.2e-125 452.6 285 81.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 3.8e-125 451.8 285 81.8
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.0e-125 451.4 285 81.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.0e-125 451.4 285 81.8
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.1e-124 450.3 285 80.0
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.1e-124 450.3 285 80.0
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.5e-124 449.9 285 80.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.5e-124 449.1 285 81.4
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 7.2e-124 447.6 285 78.9
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 4.7e-123 444.9 285 80.0
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 8.0e-123 444.1 285 79.3
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 4.0e-122 441.8 285 81.4
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 4.0e-122 441.8 284 79.6
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 6.8e-122 441.0 285 79.3
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 6.8e-122 441.0 285 80.0
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 6.8e-122 441.0 285 79.3
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.2e-121 440.3 285 80.7
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 4.4e-121 438.3 285 77.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 7.5e-121 437.6 285 76.8
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.5e-121 437.6 283 79.2
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.7e-120 436.4 284 78.9
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.7e-120 436.4 285 76.5
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 2.2e-120 436.0 285 79.3
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.8e-120 435.6 285 77.9
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 3.7e-120 435.3 285 78.6
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.8e-120 434.9 285 78.2
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 4.8e-120 434.9 285 77.9
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 6.3e-120 434.5 285 77.5
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 6.3e-120 434.5 285 77.9
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 6.3e-120 434.5 285 77.9
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 8.3e-120 434.1 285 77.5
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.1e-119 433.7 285 77.2
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 1.8e-119 433.0 285 78.2
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 4.1e-119 431.8 285 77.5
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 1.2e-118 430.3 285 77.5
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.6e-118 429.9 285 76.8
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.5e-118 428.7 285 76.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.5e-118 428.3 285 77.5
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 4.5e-118 428.3 285 77.2
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 5.9e-118 427.9 296 73.6
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.0e-117 427.2 285 75.1
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 1.7e-117 426.4 285 74.7
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.0e-117 424.9 285 75.1
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 8.6e-117 424.1 285 76.1
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 1.9e-116 422.9 313 71.9
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.9e-116 422.9 285 75.1
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.9e-116 422.9 283 76.0
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.2e-116 421.8 285 76.8
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 7.2e-116 421.0 272 77.9
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 7.2e-116 421.0 285 75.8
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 9.5e-116 420.6 285 75.1
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.8e-115 419.1 285 73.7
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.7e-115 418.3 292 74.3
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.0e-114 417.2 285 73.7
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.0e-114 417.2 289 74.0
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.3e-114 416.0 285 75.4
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 5.2e-114 414.8 285 74.0
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.2e-113 413.7 285 73.0
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 2.6e-113 412.5 283 74.6
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 4.4e-113 411.8 285 74.0
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.7e-112 409.8 285 74.0
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 2.2e-112 409.5 258 79.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.8e-112 409.1 285 75.4
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 2.8e-112 409.1 283 74.2
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 3.7e-112 408.7 344 65.4
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 6.3e-112 407.9 286 74.8
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 8.3e-112 407.5 285 71.6
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.4e-111 406.8 284 72.9
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.8e-111 406.4 285 75.4
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.8e-111 406.4 287 73.9
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.8e-111 406.4 286 72.7
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 9.2e-111 404.1 286 72.4
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.2e-110 403.7 293 72.4
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 2.7e-110 402.5 286 73.1
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 4.5e-110 401.7 285 74.4
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 7.8e-110 401.0 286 73.1
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 3.8e-109 398.7 281 71.5
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 3.8e-109 398.7 286 72.0
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 5.0e-109 398.3 286 71.7
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 8.6e-109 397.5 286 72.0
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 1.1e-108 397.1 285 70.5
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.9e-108 396.4 284 71.1
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 3.3e-108 395.6 286 72.0
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 5.6e-108 394.8 285 69.5
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.8e-107 392.5 285 70.9
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 6.1e-107 391.3 285 68.8
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.0e-106 390.6 289 71.6
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.4e-106 390.2 285 73.0
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.3e-106 389.4 289 71.6
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 3.0e-106 389.0 287 71.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 6.8e-106 387.9 289 71.6
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 6.8e-106 387.9 289 71.3
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 8.9e-106 387.5 289 69.9
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.6e-105 386.0 328 62.8
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 3.4e-105 385.6 289 70.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 9.8e-105 384.0 288 70.8
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 4.9e-104 381.7 289 70.6
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.1e-103 380.6 289 70.2
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-103 380.6 289 70.6
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.1e-103 380.6 289 70.2
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 1.1e-103 380.6 316 64.9
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.4e-103 380.2 285 66.7
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.4e-103 380.2 285 66.7
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 1.9e-103 379.8 289 70.2
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 9.2e-103 377.5 286 68.5
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.2e-102 377.1 289 67.1
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.0e-102 376.3 285 69.1
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 2.7e-102 375.9 289 69.6
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 2.7e-102 375.9 285 71.6
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 3.5e-102 375.6 285 69.8
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 3.5e-102 375.6 285 69.8
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 2.3e-101 372.9 250 75.6
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.5e-100 370.2 285 71.2
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 1.2e-99 367.1 279 69.5
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.6e-99 366.7 289 65.7
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.8e-98 361.3 284 65.5
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.5e-97 357.8 309 62.1
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 6.4e-96 354.8 250 70.8
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.4e-95 352.8 253 71.9
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 3.2e-95 352.4 250 72.4
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 5.0e-93 345.1 290 63.8
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 5.2e-90 335.1 286 60.5
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 8.9e-90 334.3 286 62.6
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 2.6e-89 332.8 216 76.4
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.4e-89 332.4 216 78.7
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 1.1e-87 327.4 344 56.7
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.1e-87 325.5 282 61.3
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 9.2e-87 324.3 263 66.9
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.2e-86 323.9 285 60.0
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.6e-84 315.1 261 67.4
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.1e-82 310.8 216 72.7
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.2e-78 297.4 259 62.2
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 1.2e-73 280.8 264 59.5
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 6.2e-67 258.5 281 50.9
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.1e-60 237.7 216 56.0
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.2e-55 219.5 301 49.2
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.0e-53 214.5 347 44.1
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 4.8e-51 205.7 120 80.0
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.2e-51 205.3 230 57.8
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 4.2e-47 192.6 287 44.6
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 6.7e-45 185.3 159 57.2
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 8.7e-45 184.9 158 58.2
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.7e-43 179.5 122 71.3
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 9.0e-42 174.9 161 56.5
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.3e-37 160.2 155 55.5
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-31 141.0 280 41.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 3.6e-30 136.3 276 40.6
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 5.7e-28 129.0 85 69.4
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.3e-26 122.5 122 53.3
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.5e-23 113.6 66 87.9
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.7e-22 110.2 156 46.2
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.7e-22 109.4 97 59.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.3e-21 107.1 164 41.5
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.5e-20 104.4 242 31.4
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 8.0e-14 82.0 148 40.5
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.9e-08 63.5 75 48.0
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 6.5e-08 62.4 49 65.3


User provided reference genes

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