Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.5e-298 1028.9 581 100.0
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 6.0e-226 787.7 562 83.5
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.1e-182 642.1 594 62.5
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.1e-179 634.0 601 60.6
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 5.9e-157 558.5 552 56.0
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 8.9e-153 544.7 552 54.7
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 8.3e-151 538.1 564 53.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 2.9e-148 529.6 551 53.2
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.3e-147 525.8 468 59.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 4.3e-147 525.8 554 55.4
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.1e-146 523.5 610 50.5
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.8e-146 523.1 551 52.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.4e-142 510.0 588 51.5
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 4.6e-141 505.8 496 56.0
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 6.6e-140 501.9 588 51.0
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 4.6e-133 479.2 513 51.9
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.1e-132 475.7 486 54.5
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.9e-131 473.8 540 51.1
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 9.5e-131 471.5 561 50.1
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 9.5e-131 471.5 561 50.1
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.6e-130 470.7 580 50.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 8.1e-130 468.4 581 50.9
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 6.8e-129 465.3 627 45.9
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.0e-128 463.8 591 50.9
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.4e-126 457.6 491 53.4
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.7e-125 453.4 595 45.9
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.7e-125 453.4 526 51.7
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 3.0e-124 449.9 550 49.6
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.5e-123 447.6 669 42.8
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.9e-123 447.2 558 48.7
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.7e-122 442.6 618 44.5
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.4e-121 441.0 618 44.3
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-121 441.0 620 44.2
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 4.0e-121 439.5 546 48.4
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.5e-120 437.6 592 45.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 5.8e-120 435.6 560 47.1
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.3e-119 434.5 593 44.2
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.3e-119 434.5 657 44.6
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.2e-119 433.7 651 48.2
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 6.4e-119 432.2 528 49.8
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.4e-118 431.0 561 47.4
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.4e-118 430.3 623 42.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 4.2e-118 429.5 537 47.1
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 5.4e-118 429.1 625 44.3
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 7.1e-118 428.7 492 49.8
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 9.2e-118 428.3 539 46.2
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.7e-117 426.8 541 46.2
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 6.6e-116 422.2 638 42.3
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 6.6e-116 422.2 547 46.3
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.5e-115 420.2 525 47.0
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.5e-115 420.2 602 45.8
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.3e-115 419.5 584 43.8
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 7.3e-115 418.7 534 46.4
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.8e-113 414.1 525 48.8
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.8e-113 414.1 604 43.2
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 5.3e-113 412.5 613 43.9
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.0e-112 410.6 547 46.1
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.4e-112 409.5 531 45.8
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 9.9e-112 408.3 526 46.8
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.3e-111 407.9 559 45.3
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 2.2e-111 407.1 744 38.4
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.8e-111 406.4 615 42.6
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 6.4e-111 405.6 571 43.6
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.1e-110 404.8 550 44.9
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 7.8e-109 398.7 566 44.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.0e-108 398.3 543 45.1
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.3e-108 397.9 613 42.7
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.0e-108 396.7 517 44.5
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 4.8e-106 389.4 646 40.6
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 6.2e-106 389.0 512 45.7
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.1e-105 386.7 554 43.5
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.5e-104 384.4 658 39.4
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.6e-104 383.6 622 41.3
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 7.6e-104 382.1 555 43.4
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.3e-103 381.3 701 39.7
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 3.8e-103 379.8 463 47.9
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.4e-102 377.9 534 43.8
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.5e-99 367.9 470 46.6
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.6e-99 365.9 660 39.2
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 3.7e-98 363.2 593 40.6
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 3.7e-98 363.2 420 51.7
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-97 361.7 700 35.6
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 4.0e-97 359.8 482 44.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.6e-96 357.1 700 35.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.8e-96 355.9 658 40.1
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 6.4e-95 352.4 657 37.6
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.1e-94 351.7 546 41.2
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.4e-94 351.3 696 35.3
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.0e-93 345.9 500 42.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.7e-92 342.4 317 58.4
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 8.2e-90 335.5 830 31.7
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.2e-90 335.5 424 46.2
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.3e-89 332.8 670 35.7
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 2.1e-85 320.9 395 49.6
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.8e-84 317.8 305 57.0
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 5.1e-84 316.2 566 38.7
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.1e-84 316.2 198 74.2
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 6.7e-84 315.8 504 39.7
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.0e-80 304.3 454 41.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.9e-79 300.4 267 59.6
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.3e-76 290.8 427 42.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.1e-75 288.5 428 44.2
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.5e-72 276.6 706 30.9
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 8.5e-63 245.7 197 64.0
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.1e-62 245.4 227 58.1
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 7.2e-62 242.7 400 38.0
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-59 235.0 392 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 7.0e-57 226.1 472 36.0
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 9.1e-57 225.7 243 49.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-56 224.6 392 36.2
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 9.7e-51 205.7 520 34.2
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 7.7e-48 196.1 177 55.4
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 5.5e-46 189.9 222 50.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.3e-42 176.4 185 54.1
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.4e-41 175.3 195 45.6
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 3.6e-37 160.6 183 51.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 8.6e-31 139.4 201 40.8
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 3.3e-30 137.5 228 39.9
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 6.8e-28 129.8 248 35.5
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-27 126.3 195 39.5
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-27 126.3 195 39.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 9.8e-27 125.9 313 32.9
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.9e-23 114.0 229 34.9
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.8e-20 105.1 141 43.3
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.8e-19 99.4 114 49.1
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-18 98.6 126 43.7
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.9e-17 95.1 68 63.2
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 7.1e-17 93.2 134 43.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.9e-14 85.1 107 43.0
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-13 81.3 160 34.4
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 3.6e-13 80.9 48 79.2
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.3e-12 78.2 49 71.4
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.0e-11 75.1 107 40.2
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.8e-11 73.6 92 48.9
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.1e-09 67.4 77 37.7
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.7e-08 64.7 103 38.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.7e-08 64.7 103 38.8
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 4.6e-08 63.9 137 33.6
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 4.6e-08 63.9 76 43.4
PSO782G1992 Papaver somniferum HOM05D005415 ORTHO05D006242 7.8e-08 63.2 132 34.1
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.9e-07 60.8 56 57.1
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.1e-06 59.3 36 72.2
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.5e-06 58.9 169 30.8
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.9e-06 58.5 176 27.3
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.5e-06 58.2 170 25.9
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.5e-06 58.2 170 25.9
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 5.6e-06 57.0 57 50.9
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 9.6e-06 56.2 123 32.5


User provided reference genes

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