Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 0.0e+00 1277.7 656 100.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 0.0e+00 1226.8 656 95.3
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.7e-293 1012.3 655 79.1
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.0e-286 988.8 659 76.0
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 1.1e-279 966.5 658 74.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.4e-276 956.1 656 73.2
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 3.2e-276 954.9 658 74.0
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.2e-275 953.0 653 73.8
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 8.7e-274 946.8 652 72.4
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.2e-267 926.4 656 70.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 2.1e-267 925.6 659 73.0
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-265 919.8 653 71.2
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.5e-265 919.5 657 70.8
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 9.7e-265 916.8 656 70.1
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.7e-265 916.8 657 70.3
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 2.2e-264 915.6 657 70.6
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 4.8e-264 914.4 655 70.2
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 5.9e-262 907.5 660 68.6
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 5.9e-262 907.5 656 69.8
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 7.7e-262 907.1 660 69.8
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.2e-261 905.6 655 70.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.9e-260 902.5 655 70.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.5e-260 901.0 653 70.9
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 2.7e-259 898.7 659 69.5
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.1e-259 897.5 653 70.1
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.9e-258 894.8 653 70.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 4.4e-257 891.3 655 68.2
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 7.4e-257 890.6 656 68.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.2e-256 889.0 659 70.3
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.5e-254 882.9 656 68.3
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 2.0e-254 882.5 656 67.8
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.6e-254 882.1 656 68.6
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 5.9e-254 880.9 659 68.7
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.0e-253 880.2 653 68.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 5.0e-253 877.9 657 67.4
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 5.0e-253 877.9 659 67.7
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.4e-252 876.3 658 67.8
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-252 875.9 653 68.6
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.7e-251 872.1 657 66.4
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 8.0e-251 870.5 666 68.2
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 8.0e-251 870.5 659 67.2
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.0e-250 870.2 660 67.7
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 1.8e-250 869.4 651 66.8
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.0e-249 865.9 653 68.6
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 7.4e-249 864.0 659 66.9
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 2.8e-248 862.1 657 68.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 1.8e-247 859.4 659 66.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.3e-242 842.4 648 65.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 8.8e-242 840.5 656 66.5
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 8.8e-242 840.5 659 65.1
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.2e-241 840.1 659 64.3
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.5e-241 839.7 632 68.2
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 3.3e-241 838.6 652 65.6
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 4.4e-241 838.2 654 64.5
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 2.2e-240 835.9 679 63.5
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 4.8e-240 834.7 656 65.1
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.1e-239 833.6 632 66.8
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.4e-239 832.4 667 63.4
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.2e-237 825.9 506 83.0
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 8.5e-237 823.9 660 64.1
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.1e-236 823.5 660 64.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.9e-236 822.8 656 63.7
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.7e-235 818.9 656 63.6
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.0e-234 815.5 658 63.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 4.0e-234 815.1 653 62.8
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 6.8e-234 814.3 646 64.7
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 8.8e-234 813.9 655 62.1
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 1.5e-233 813.1 664 63.9
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.3e-232 810.1 672 62.8
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 6.3e-232 807.7 658 62.6
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.1e-231 803.9 650 62.9
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.1e-228 797.0 653 62.9
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.9e-228 796.2 658 62.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.5e-228 794.7 661 61.4
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 7.2e-228 794.3 653 62.2
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 8.0e-227 790.8 655 63.4
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 6.8e-226 787.7 656 62.2
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 3.4e-225 785.4 656 61.9
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.7e-224 783.1 656 61.7
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 1.7e-224 783.1 656 61.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 5.9e-222 774.6 659 60.8
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 5.9e-222 774.6 659 60.8
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 3.6e-219 765.4 653 61.1
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 6.1e-219 764.6 654 59.9
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.6e-217 759.2 658 57.8
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.7e-216 755.4 653 58.2
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.4e-215 753.4 651 62.7
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 4.6e-214 748.4 647 57.8
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 7.8e-214 747.7 655 59.2
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.6e-211 738.8 656 61.3
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 5.8e-209 731.5 654 59.0
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.1e-207 727.2 657 58.8
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.2e-206 723.8 664 55.7
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 7.3e-196 688.0 649 57.2
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.1e-195 686.4 683 51.5
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.9e-194 681.0 490 70.2
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.7e-189 666.8 655 53.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 4.7e-187 658.7 660 54.1
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.9e-183 646.7 667 51.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.5e-148 530.8 521 52.0
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 8.5e-144 515.0 419 63.5
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.0e-140 503.8 622 46.8
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 2.5e-135 486.9 375 65.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.7e-133 478.8 482 52.1
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.5e-132 477.6 365 66.0
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.2e-127 459.9 665 38.8
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 9.1e-114 415.2 656 36.4
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 6.6e-104 382.5 663 36.5
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.6e-97 361.3 508 40.9
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 5.0e-96 356.3 269 64.3
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 8.6e-96 355.5 284 60.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.1e-93 347.1 367 49.3
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.7e-75 288.1 760 28.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.2e-74 283.9 266 57.1
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 6.0e-73 279.6 355 43.7
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 6.4e-67 259.6 271 53.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 5.4e-66 256.5 710 27.9
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 2.5e-55 221.1 225 56.0
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.6e-33 148.7 128 62.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 6.1e-33 146.7 82 80.5
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 2.3e-32 144.8 237 34.6
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.2e-26 123.2 101 53.5
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 7.2e-26 123.2 209 34.0
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.9e-24 117.5 99 59.6
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.7e-23 112.8 104 57.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 9.7e-23 112.8 215 35.3
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.3e-22 112.5 86 54.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.4e-21 108.2 76 68.4
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.7e-19 102.1 65 76.9
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 5.0e-19 100.5 88 53.4
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.6e-17 94.4 258 30.2
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.6e-15 88.2 65 63.1
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 7.0e-13 80.1 104 41.3
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-12 79.3 76 53.9
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 9.4e-10 69.7 98 42.9
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 3.4e-07 61.2 41 80.5
CDE05G1743 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 9.8e-07 59.7 47 57.4


User provided reference genes

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