Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 4.4e-283 977.2 475 100.0
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.2e-237 826.2 482 84.2
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 5.2e-228 794.3 476 80.0
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 9.3e-217 756.9 484 76.4
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.0e-215 753.4 484 75.4
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.3e-215 753.1 479 76.4
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.9e-215 751.5 482 74.7
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 8.7e-215 750.4 473 77.0
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 8.7e-215 750.4 482 75.3
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 9.6e-214 746.9 481 76.9
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 1.3e-213 746.5 462 77.7
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 3.6e-213 745.0 479 76.4
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 4.8e-213 744.6 479 75.2
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 1.8e-212 742.7 475 76.4
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 2.4e-212 742.3 470 76.0
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 6.9e-212 740.7 475 76.2
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.5e-211 739.6 475 76.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.6e-211 738.8 492 75.0
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 4.2e-209 731.5 478 73.4
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.8e-207 726.1 479 71.6
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 2.5e-206 722.2 403 83.6
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 2.1e-205 719.2 474 73.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.8e-204 716.1 488 72.3
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 3.1e-204 715.3 474 74.1
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 6.9e-204 714.1 473 72.9
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 1.2e-203 713.4 479 71.2
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 2.0e-203 712.6 452 74.8
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 4.5e-203 711.4 398 83.2
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.3e-202 709.9 475 73.3
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 1.3e-202 709.9 401 81.8
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 2.9e-202 708.8 478 71.1
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 6.5e-202 707.6 480 72.5
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.1e-201 706.8 477 72.1
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.9e-201 706.1 478 71.5
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 3.2e-201 705.3 479 71.6
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 9.3e-201 703.7 468 70.7
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.0e-199 698.7 476 71.0
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 3.0e-199 698.7 480 70.8
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 6.7e-199 697.6 482 70.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 6.7e-199 697.6 467 72.2
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 1.1e-198 696.8 481 69.9
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.5e-198 696.4 475 71.4
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.9e-198 696.0 450 72.2
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.5e-198 695.7 497 69.6
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 7.4e-198 694.1 470 71.9
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 4.8e-197 691.4 459 72.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 8.2e-197 690.6 464 70.7
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.1e-196 690.3 474 71.9
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.1e-196 690.3 450 71.8
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 3.1e-196 688.7 447 72.5
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 1.5e-195 686.4 482 68.7
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 4.5e-195 684.9 480 69.2
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 5.9e-195 684.5 450 71.6
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.6e-195 684.1 473 69.8
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 3.8e-194 681.8 483 68.1
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.9e-193 679.5 479 68.9
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.0e-191 673.7 477 69.2
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 3.9e-191 671.8 466 70.0
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.6e-189 666.4 464 69.4
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 8.2e-189 664.1 476 68.3
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 8.2e-189 664.1 453 71.3
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 6.9e-188 661.0 396 77.0
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 2.9e-186 655.6 465 68.0
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 6.5e-186 654.4 457 68.7
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 8.5e-186 654.1 472 68.6
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 5.5e-185 651.4 445 68.5
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 7.2e-185 651.0 471 68.6
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 9.4e-185 650.6 470 68.7
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.6e-184 649.8 422 76.1
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 6.1e-184 647.9 470 67.4
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 7.9e-184 647.5 449 69.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 1.4e-183 646.7 465 67.7
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 1.8e-183 646.4 466 68.2
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 3.9e-183 645.2 464 67.2
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 5.1e-183 644.8 439 69.2
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 8.8e-183 644.0 467 67.7
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 8.8e-183 644.0 467 67.7
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 1.5e-182 643.3 464 66.8
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-182 642.9 450 67.8
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 9.7e-182 640.6 452 69.7
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.2e-181 639.4 446 66.8
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 4.8e-181 638.3 470 66.2
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 3.1e-180 635.6 393 76.6
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 4.1e-180 635.2 444 68.2
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 4.1e-180 635.2 475 68.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 3.4e-179 632.1 472 64.0
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 5.9e-179 631.3 411 73.7
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.7e-178 629.8 363 84.8
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 1.4e-177 626.7 383 79.9
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.9e-177 626.3 396 73.2
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 4.2e-177 625.2 403 69.7
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 5.7e-174 614.8 357 79.3
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 8.2e-173 610.9 357 80.1
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.4e-172 609.4 386 71.5
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 3.5e-171 605.5 466 65.2
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 1.3e-170 603.6 472 64.0
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 4.2e-169 598.6 411 65.9
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.1e-168 596.3 415 65.5
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 8.0e-168 594.3 396 73.7
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 3.7e-165 585.5 421 64.6
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 1.1e-164 583.9 443 62.8
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.2e-160 570.5 356 74.2
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 3.5e-155 552.4 353 69.4
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 7.2e-153 544.7 369 70.7
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 9.5e-153 544.3 394 66.5
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.2e-133 479.9 444 57.2
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.2e-127 458.8 325 71.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.9e-125 453.0 406 52.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 2.9e-125 453.0 426 52.3
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 7.8e-123 444.9 250 83.6
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 6.6e-122 441.8 404 54.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.6e-120 437.2 406 51.2
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 2.6e-110 403.3 435 45.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.4e-103 380.9 289 66.4
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 3.9e-90 336.3 243 63.0
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 2.3e-82 310.5 234 69.2
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.4e-76 291.2 173 78.6
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 3.6e-75 286.6 185 66.5
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 1.0e-69 268.5 160 75.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 2.7e-67 260.4 206 57.8
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.1e-63 248.4 159 69.2
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 4.1e-55 219.9 129 74.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.0e-46 191.0 129 65.9
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.8e-32 144.1 384 29.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 4.1e-31 140.2 377 29.7
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.2e-27 128.6 86 70.9
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.2e-22 112.1 411 27.5
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 8.6e-21 105.9 347 25.9
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 2.3e-13 81.3 54 75.9
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 1.9e-12 78.2 80 58.8
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 2.3e-10 71.2 55 58.2
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.5e-09 68.6 91 39.6
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.0e-09 68.2 166 33.1
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 54.1
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 54.1
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 1.9e-07 61.6 88 42.0
Rhsim13G0060400 Rhododendron simsii HOM05D001179 ORTHO05D339156 2.1e-06 58.2 46 58.7
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 3.5e-06 57.4 243 21.8


User provided reference genes

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