Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 0.0e+00 1556.2 791 100.0
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 9.6e-251 870.5 741 66.4
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 3.1e-217 759.2 740 56.8
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-193 681.0 741 52.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.6e-192 677.2 741 51.1
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 4.5e-192 675.6 741 51.6
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.0e-188 662.9 741 50.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.5e-184 649.4 741 49.7
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-181 640.2 741 49.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.7e-181 639.0 741 49.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.0e-180 636.0 639 55.7
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.6e-179 633.3 741 49.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.4e-179 632.9 741 48.7
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 7.5e-179 631.7 744 49.2
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.2e-176 624.4 745 49.1
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.3e-174 616.3 744 47.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 9.5e-174 614.8 744 47.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.1e-173 613.6 743 47.6
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 8.0e-173 611.7 744 47.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 7.0e-169 598.6 743 47.0
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.2e-169 598.2 743 45.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.2e-169 598.2 743 45.8
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 5.0e-167 592.4 743 47.2
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.6e-165 587.4 743 46.4
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.1e-165 587.0 743 46.7
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 6.2e-165 585.5 741 45.2
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.3e-164 583.6 741 46.2
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.3e-164 583.6 743 46.3
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.6e-163 580.1 742 45.7
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.6e-163 580.1 742 45.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.9e-161 573.9 742 45.8
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.1e-160 570.5 747 45.4
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-160 570.1 744 45.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-160 570.1 744 45.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.5e-160 569.7 744 45.3
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.1e-158 564.7 695 45.9
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.2e-157 561.2 731 45.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.2e-157 558.9 742 43.5
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 6.2e-157 558.9 732 45.5
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.3e-156 557.0 731 45.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.3e-156 557.0 743 44.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 7.5e-155 552.0 742 43.8
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-153 547.7 744 43.7
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.1e-152 543.9 639 48.4
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.1e-152 543.9 742 43.3
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.5e-150 537.0 755 42.9
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.3e-150 536.6 743 44.5
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.2e-149 534.6 374 70.9
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.2e-149 534.6 741 43.2
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 3.1e-148 530.0 374 70.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 6.8e-148 528.9 741 42.1
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.5e-147 527.7 713 43.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 4.9e-146 522.7 798 41.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.9e-145 520.8 745 42.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.0e-143 513.5 746 42.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.6e-143 512.3 712 42.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.5e-142 510.4 723 42.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.8e-141 506.9 650 44.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.4e-140 503.8 714 41.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 7.6e-139 498.8 742 41.6
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.7e-138 497.7 386 66.3
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.2e-138 497.3 711 41.2
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.9e-138 496.1 742 40.6
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.4e-137 492.7 728 41.5
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 7.1e-137 492.3 753 41.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 6.0e-136 489.2 721 41.7
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.3e-135 488.0 700 42.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 8.7e-135 485.3 743 40.1
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.7e-135 485.3 719 40.3
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.1e-134 485.0 749 40.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.1e-132 478.4 756 41.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.3e-132 476.1 719 39.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.7e-130 471.1 742 39.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.7e-130 471.1 742 39.1
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.9e-130 469.5 743 39.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 7.1e-129 465.7 638 42.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 9.3e-129 465.3 455 54.3
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.0e-127 461.8 666 43.2
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-127 461.5 742 40.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.8e-127 461.1 756 38.5
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.8e-127 461.1 667 43.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.3e-127 460.7 640 43.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.1e-127 459.5 666 43.1
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 8.7e-127 458.8 701 40.5
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 8.7e-127 458.8 387 61.2
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-126 458.4 641 43.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.5e-126 458.0 697 39.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 5.6e-126 456.1 752 39.5
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-125 453.8 766 39.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.7e-125 453.4 667 42.7
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.8e-125 453.0 670 42.1
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.1e-125 452.2 300 71.3
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.4e-124 450.7 753 38.9
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.9e-124 449.1 658 39.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-123 447.6 645 43.1
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.6e-123 447.2 645 40.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 3.4e-123 446.8 656 40.2
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 3.4e-123 446.8 656 40.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-123 446.4 656 40.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 7.6e-123 445.7 636 41.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.0e-122 445.3 744 39.5
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.7e-122 444.5 743 38.9
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.7e-122 444.5 644 40.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.8e-122 443.4 742 38.1
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-121 441.8 644 40.4
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.5e-121 440.7 689 39.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.5e-121 440.7 644 40.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-121 440.3 742 38.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.2e-121 440.3 644 41.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 9.3e-121 438.7 747 37.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 1.2e-120 438.3 298 72.1
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.6e-120 438.0 386 59.1
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 7.9e-120 435.6 752 39.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-119 434.5 656 39.9
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.8e-119 434.5 644 39.3
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 5.1e-119 433.0 640 41.7
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.9e-118 431.0 373 58.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.7e-118 429.5 767 36.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 5.7e-118 429.5 373 58.7
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-117 428.3 657 39.6
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.6e-117 427.9 388 58.5
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 2.1e-117 427.6 557 44.3
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.4e-116 424.9 736 37.4
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-116 424.5 736 37.4
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.1e-116 423.7 714 37.7
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.1e-116 423.7 714 37.7
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.1e-116 423.7 714 37.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.1e-116 423.7 375 57.9
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.0e-116 423.3 644 39.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.9e-116 422.5 375 57.6
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 2.6e-115 420.6 644 40.1
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.6e-115 420.6 712 37.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.4e-115 420.2 731 38.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 5.0e-114 416.4 704 37.8
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.5e-113 414.1 383 56.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.2e-112 411.8 644 38.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.0e-111 407.1 641 38.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.7e-111 406.0 380 57.1
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.5e-110 404.8 352 59.7
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.4e-110 402.5 299 65.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.3e-103 380.9 611 38.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.5e-99 366.7 642 35.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.6e-96 357.1 642 34.9
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-95 354.4 326 59.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 3.5e-91 340.5 643 34.2
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.2e-88 332.0 289 62.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.3e-85 322.0 642 31.6
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.2e-85 321.2 326 54.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.2e-85 319.3 268 61.9
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.2e-81 307.0 235 66.4
Haze_16389 Corylus avellana HOM05D029806 ORTHO05D013293 4.7e-80 303.5 200 80.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.3e-77 295.4 204 67.2
Haze_23543 Corylus avellana HOM05D000082 ORTHO05D000038 7.0e-76 289.7 201 75.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.2e-65 253.1 237 54.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-58 231.1 460 34.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.6e-56 225.3 292 43.2
Haze_01688 Corylus avellana HOM05D029806 ORTHO05D013293 4.3e-49 200.7 178 64.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 8.3e-45 186.4 460 28.7
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 3.6e-40 171.0 138 64.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.3e-39 168.3 352 35.2
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-32 145.2 646 26.9
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 5.8e-30 137.1 147 49.0
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.2e-29 135.2 101 64.4
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.8e-29 134.4 117 53.0
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.2e-28 131.0 99 65.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.1e-28 130.2 95 67.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.5e-25 121.7 118 55.9
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.6e-25 120.6 125 52.8
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.9e-20 105.5 249 34.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.4e-20 105.1 231 31.6
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.1e-19 102.1 207 33.8
Haze_18375 Corylus avellana HOM05D029806 ORTHO05D013293 3.9e-18 97.8 94 59.6
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.3e-17 94.7 104 51.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 3.4e-14 84.7 128 40.6
Haze_10530 Corylus avellana HOM05D029806 ORTHO05D013293 6.4e-13 80.5 107 50.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.1e-10 70.9 76 47.4
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.4e-09 67.0 50 60.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 6.2e-08 63.9 91 44.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 1.1e-07 63.2 239 27.6


User provided reference genes

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