Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_06152 Corylus avellana HOM05D004132 ORTHO05D006273 0.0e+00 1280.0 626 100.0
Cfa000667 Carpinus fangiana HOM05D004132 ORTHO05D006273 2.1e-216 756.1 630 65.9
CiPaw.09G074000 Carya illinoinensis HOM05D004132 ORTHO05D006273 2.6e-203 712.6 628 62.4
QL04p095526 Quercus lobata HOM05D004132 ORTHO05D006273 3.0e-199 699.1 635 60.6
Dinv25393 Davidia involucrata HOM05D004132 ORTHO05D006273 2.2e-197 693.0 630 59.7
MD10G1229100 Malus domestica HOM05D004132 ORTHO05D006273 7.0e-196 688.0 627 59.5
Prupe.4G115500 Prunus persica HOM05D004132 ORTHO05D006273 9.1e-196 687.6 628 59.1
Cpa.g.sc84.15 Carica papaya HOM05D004132 ORTHO05D006273 2.7e-195 686.0 626 59.9
Atru.chr3.3175 Acer truncatum HOM05D004132 ORTHO05D006273 3.8e-194 682.2 628 59.2
Lj6g0002780 Lotus japonicus HOM05D004132 ORTHO05D006273 8.5e-194 681.0 626 58.9
TAR626G0350 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.5e-193 680.2 620 58.9
VMungo1383G0131 Vigna mungo HOM05D004132 ORTHO05D006273 1.9e-193 679.9 628 58.8
MD05G1248600 Malus domestica HOM05D004132 ORTHO05D006273 3.2e-193 679.1 627 59.2
RcHm_v2.0_Chr5g0020641 Rosa chinensis HOM05D004132 ORTHO05D006273 7.2e-193 677.9 627 58.9
Glyma.02G091300 Glycine max HOM05D004132 ORTHO05D006273 2.1e-192 676.4 628 58.8
GSVIVG01010923001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.1e-192 676.4 626 58.6
Glyma.18G291800 Glycine max HOM05D004132 ORTHO05D006273 4.7e-192 675.2 628 58.6
CSS0017532 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D006273 8.0e-192 674.5 630 58.6
FAN16G0015 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.4e-191 673.7 626 58.3
RcHm_v2.0_Chr3g0486261 Rosa chinensis HOM05D004132 ORTHO05D006273 1.4e-191 673.7 628 58.6
Thecc.04G197300 Theobroma cacao HOM05D004132 ORTHO05D006273 2.3e-191 672.9 625 58.2
Potri.013G105200 Populus trichocarpa HOM05D004132 ORTHO05D006273 6.8e-191 671.4 628 58.6
Phvul.008G010100 Phaseolus vulgaris HOM05D004132 ORTHO05D006273 1.7e-189 666.8 628 57.3
Sabra13G0090900 Salix brachista HOM05D004132 ORTHO05D006273 2.2e-189 666.4 628 58.1
FvH4_3g12680 Fragaria vesca HOM05D004132 ORTHO05D006273 2.8e-189 666.0 626 57.8
FAN25G0118 Fragaria x ananassa HOM05D004132 ORTHO05D006273 1.1e-188 664.1 626 57.8
Hma1.2p1_0325F.1_g126090 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 1.1e-188 664.1 633 58.1
Lalb_Chr17g0336121 Lupinus albus HOM05D004132 ORTHO05D006273 1.4e-188 663.7 622 57.7
Gohir.A10G126900 Gossypium hirsutum HOM05D004132 ORTHO05D006273 1.8e-188 663.3 625 57.4
COL.COLO4_20206 Corchorus olitorius HOM05D004132 ORTHO05D006273 3.1e-188 662.5 625 57.4
CANSAT78G2113 Cannabis sativa HOM05D004132 ORTHO05D006273 5.4e-188 661.8 616 58.4
Gohir.D10G139300 Gossypium hirsutum HOM05D004132 ORTHO05D006273 2.0e-187 659.8 625 57.0
Gorai.011G155000 Gossypium raimondii HOM05D004132 ORTHO05D006273 3.5e-187 659.1 625 57.0
Duzib151G0861 Durio zibethinus HOM05D004132 ORTHO05D006273 5.9e-187 658.3 625 57.1
THA.LOC104826464 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 1.3e-186 657.1 628 57.0
Psat3g096280 Pisum sativum HOM05D004132 ORTHO05D006273 2.2e-186 656.4 629 57.2
Ciclev10011787m.g Citrus clementina HOM05D004132 ORTHO05D006273 5.0e-186 655.2 628 56.7
Eucgr.C02274 Eucalyptus grandis HOM05D004132 ORTHO05D006273 5.0e-186 655.2 636 56.8
THA.LOC104800472 Tarenaya hassleriana HOM05D004132 ORTHO05D006273 5.0e-186 655.2 628 57.3
Ca_06096_v3 Cicer arietinum L. HOM05D004132 ORTHO05D006273 8.5e-186 654.4 626 56.7
DCAR_001290 Daucus carota HOM05D004132 ORTHO05D006273 8.5e-186 654.4 623 57.5
Nn6g34644 Nelumbo nucifera HOM05D004132 ORTHO05D006273 1.1e-185 654.1 629 56.8
Sc08g0001660 Simmondsia chinensis HOM05D004132 ORTHO05D006273 5.5e-185 651.7 625 55.8
Rhsim04G0004400 Rhododendron simsii HOM05D004132 ORTHO05D006273 9.5e-185 651.0 644 56.4
Hund00133 Selenicereus undatus HOM05D004132 ORTHO05D006273 1.2e-184 650.6 627 56.9
PGSC0003DMG400023334 Solanum tuberosum HOM05D004132 ORTHO05D006273 1.2e-184 650.6 633 55.9
ClCG01G025610 Citrullus lanatus HOM05D004132 ORTHO05D006273 2.1e-184 649.8 626 58.0
Sopen05g034650 Solanum pennellii HOM05D004132 ORTHO05D006273 5.2e-183 645.2 633 55.3
Cc09_g05560 Coffea canephora HOM05D004132 ORTHO05D006273 6.8e-183 644.8 637 55.7
arahy.Tifrunner.gnm1.ann1.KJS3LB Arachis hypogaea HOM05D004132 ORTHO05D006273 1.2e-182 644.0 632 56.2
arahy.Tifrunner.gnm1.ann1.L32XPY Arachis hypogaea HOM05D004132 ORTHO05D006273 1.2e-182 644.0 632 56.2
AUR62013238 Chenopodium quinoa HOM05D004132 ORTHO05D006273 4.4e-182 642.1 611 57.4
SGA_v2.0_scaffold298G47699 Striga asiatica HOM05D004132 ORTHO05D006273 9.8e-182 641.0 636 56.1
Medtr7g083030 Medicago truncatula HOM05D004132 ORTHO05D006273 1.1e-180 637.5 631 56.9
Sed0002662 Sechium edule HOM05D004132 ORTHO05D006273 1.1e-180 637.5 628 57.2
Hund06337 Selenicereus undatus HOM05D004132 ORTHO05D006273 1.1e-180 637.5 615 56.4
Ah.06g194990 Amaranthus hybridus HOM05D004132 ORTHO05D006273 9.2e-180 634.4 626 55.9
CAN.G1921.3 Capsicum annuum HOM05D004132 ORTHO05D006273 1.6e-179 633.6 626 54.3
SGA_v2.0_scaffold175G39350 Striga asiatica HOM05D004132 ORTHO05D006273 2.7e-179 632.9 632 56.3
MELO3C007024.2 Cucumis melo HOM05D004132 ORTHO05D006273 3.5e-179 632.5 626 57.0
TWI59G0283 Tripterygium wilfordii HOM05D004132 ORTHO05D006273 3.5e-179 632.5 595 57.6
PGR102G2051 Punica granatum HOM05D004132 ORTHO05D006273 2.3e-178 629.8 632 55.4
MBI07_g09898_MAGBIO Magnolia biondii HOM05D004132 ORTHO05D006273 2.9e-178 629.4 593 57.3
Ah.04g159510 Amaranthus hybridus HOM05D004132 ORTHO05D006273 6.6e-178 628.2 626 55.3
CsaV3_6G052840 Cucumis sativus L. HOM05D004132 ORTHO05D006273 6.6e-178 628.2 626 56.7
Eucgr.C02393 Eucalyptus grandis HOM05D004132 ORTHO05D006273 1.9e-177 626.7 643 54.7
SalBow7G0375 Salvia bowleyana HOM05D004132 ORTHO05D006273 7.3e-177 624.8 630 55.1
MSTRG.16365 Avicennia marina HOM05D004132 ORTHO05D006273 9.5e-177 624.4 633 54.7
Manes.12G056400 Manihot esculenta HOM05D004132 ORTHO05D006273 9.5e-177 624.4 608 56.2
Solyc05g056260.2 Solanum lycopersicum HOM05D004132 ORTHO05D006273 9.5e-177 624.4 583 56.4
Lsat_1_v5_gn_8_118000 Lactuca sativa HOM05D004132 ORTHO05D006273 4.7e-176 622.1 631 54.4
Nitab4.5_0000582g0060 Nicotiana tabacum HOM05D004132 ORTHO05D006273 8.0e-176 621.3 609 55.0
EL10Ac9g22320 Beta vulgaris HOM05D004132 ORTHO05D006273 1.0e-175 620.9 615 55.4
Aa31LG10G12860 Aethionema arabicum HOM05D004132 ORTHO05D006273 5.2e-175 618.6 629 54.8
Aqoxy2G02279 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 1.2e-174 617.5 626 53.7
Aqoxy7G00307 Aquilegia oxysepala HOM05D004132 ORTHO05D006273 2.0e-174 616.7 626 53.8
Migut.D01293 Erythranthe guttata HOM05D004132 ORTHO05D006273 2.6e-174 616.3 628 54.6
PSO063G4358 Papaver somniferum HOM05D004132 ORTHO05D006273 9.8e-174 614.4 595 56.6
PSO421G0604 Papaver somniferum HOM05D004132 ORTHO05D006273 9.8e-174 614.4 595 56.6
HanXRQChr12g0367151 Helianthus annuus HOM05D004132 ORTHO05D006273 1.3e-173 614.0 623 54.3
ECA232G2283 Erigeron canadensis HOM05D004132 ORTHO05D006273 1.4e-172 610.5 620 53.4
Thhalv10005992m.g Eutrema salsugineum HOM05D004132 ORTHO05D006273 1.3e-170 604.0 629 54.2
CARHR168500 Cardamine hirsuta HOM05D004132 ORTHO05D006273 3.0e-170 602.8 629 53.4
Carub.0005s2499 Capsella rubella HOM05D004132 ORTHO05D006273 1.1e-169 600.9 629 53.4
AL5G39830 Arabidopsis lyrata HOM05D004132 ORTHO05D006273 5.6e-169 598.6 629 53.1
Nitab4.5_0004719g0050 Nicotiana tabacum HOM05D004132 ORTHO05D006273 1.2e-168 597.4 608 53.5
AT3G58140 Arabidopsis thaliana HOM05D004132 ORTHO05D006273 1.6e-168 597.0 629 53.3
CDE05G2803 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 1.6e-168 597.0 632 52.2
Sp5g04580 Schrenkiella parvula HOM05D004132 ORTHO05D006273 2.1e-168 596.7 629 53.6
BraA07t30044Z Brassica rapa HOM05D004132 ORTHO05D006273 3.6e-168 595.9 629 53.1
A09p50920 Brassica napus HOM05D004132 ORTHO05D006273 4.7e-168 595.5 629 53.1
BraA09t40538Z Brassica rapa HOM05D004132 ORTHO05D006273 4.7e-168 595.5 629 53.1
TPR.G28546 Trifolium pratense HOM05D004132 ORTHO05D006273 4.7e-168 595.5 518 60.6
BcaB02g07547 Brassica carinata HOM05D004132 ORTHO05D006273 8.0e-168 594.7 629 53.1
A07p23930 Brassica napus HOM05D004132 ORTHO05D006273 8.0e-168 594.7 629 52.9
C08p33670 Brassica napus HOM05D004132 ORTHO05D006273 8.0e-168 594.7 628 53.3
ATR0215G010 Amborella trichopoda HOM05D004132 ORTHO05D006273 1.8e-167 593.6 624 53.4
BcaC08g44901 Brassica carinata HOM05D004132 ORTHO05D006273 2.3e-167 593.2 629 52.8
BolC8t50964H Brassica oleracea HOM05D004132 ORTHO05D006273 2.3e-167 593.2 628 53.3
BcaC07g40275 Brassica carinata HOM05D004132 ORTHO05D006273 4.0e-167 592.4 628 53.2
C06p25160 Brassica napus HOM05D004132 ORTHO05D006273 5.2e-167 592.0 629 52.8
BcaC07g40186 Brassica carinata HOM05D004132 ORTHO05D006273 6.8e-167 591.7 630 53.0
Os12g0533700 Oryza sativa ssp. japonica HOM05D004132 ORTHO05D006273 8.9e-167 591.3 576 54.5
BolC6t37674H Brassica oleracea HOM05D004132 ORTHO05D006273 1.5e-166 590.5 629 52.6
Peaxi162Scf00858g00012 Petunia axillaris HOM05D004132 ORTHO05D006273 1.5e-166 590.5 563 55.8
CDE05G2281 Ceratophyllum demersum HOM05D004132 ORTHO05D006273 7.5e-166 588.2 630 51.3
Zm00001eb371320 Zea mays HOM05D004132 ORTHO05D006273 3.2e-164 582.8 627 52.2
Lj5g0016492 Lotus japonicus HOM05D004132 ORTHO05D006273 4.1e-164 582.4 512 60.4
AUR62010256 Chenopodium quinoa HOM05D004132 ORTHO05D006273 2.0e-163 580.1 611 53.5
Zm00001eb153980 Zea mays HOM05D004132 ORTHO05D006273 2.7e-163 579.7 582 54.0
unitig_37.g12049 Utricularia gibba HOM05D004132 ORTHO05D006273 3.5e-163 579.3 532 57.7
HPP92_026254 Vanilla planifolia HOM05D004132 ORTHO05D006273 3.2e-156 556.2 593 52.3
GSVIVG01020339001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.0e-154 551.2 624 51.1
Pp3c5_15740 Physcomitrium patens HOM05D004132 ORTHO05D006273 4.0e-151 539.3 544 54.0
Dinv31163 Davidia involucrata HOM05D004132 ORTHO05D006273 6.8e-151 538.5 478 60.5
AagrBONN_evm.TU.Sc2ySwM_344.2605 Anthoceros agrestis HOM05D004132 ORTHO05D006273 3.8e-149 532.7 542 52.8
SMO361G0681 Selaginella moellendorffii HOM05D004132 ORTHO05D006273 2.6e-142 510.0 543 50.3
Mapoly0072s0003 Marchantia polymorpha HOM05D004132 ORTHO05D006273 3.0e-138 496.5 534 50.6
Lj1g0015918 Lotus japonicus HOM05D004132 ORTHO05D006273 6.9e-135 485.3 475 56.0
Sed0008608 Sechium edule HOM05D004132 ORTHO05D006273 2.7e-131 473.4 476 55.9
CBR_g19753 Chara braunii HOM05D004132 ORTHO05D006273 1.3e-130 471.1 533 49.2
Cre02.g079600 Chlamydomonas reinhardtii HOM05D004132 ORTHO05D006273 5.6e-121 439.1 533 46.0
MCO13G295 Micromonas commoda HOM05D004132 ORTHO05D006273 2.1e-120 437.2 543 45.9
GSVIVG01020335001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.1e-115 420.6 290 72.1
PRCOL_00002437 Prasinoderma coloniale HOM05D004132 ORTHO05D006273 4.6e-115 419.5 532 44.0
GSVIVG01020347001 Vitis vinifera HOM05D004132 ORTHO05D006273 1.6e-112 411.0 418 53.6
SEGI_05248 Sequoiadendron giganteum HOM05D004132 ORTHO05D006273 4.3e-105 386.3 497 45.3
Oeu056055.1 Olea europaea HOM05D004132 ORTHO05D006273 5.5e-100 369.4 242 75.2
Oeu056054.1 Olea europaea HOM05D004132 ORTHO05D006273 1.6e-91 341.3 516 40.7
TAR627G0383 Trochodendron aralioides HOM05D004132 ORTHO05D018522 2.2e-88 330.9 376 50.8
Dinv25394 Davidia involucrata HOM05D004132 ORTHO05D006273 8.5e-85 318.9 336 51.8
FAN21G3660 Fragaria x ananassa HOM05D004132 ORTHO05D035098 3.2e-84 317.0 228 70.2
Oeu018076.1 Olea europaea HOM05D004132 ORTHO05D006273 1.1e-79 302.0 201 74.1
GSVIVG01020319001 Vitis vinifera HOM05D004132 ORTHO05D035098 1.2e-73 282.0 206 68.4
CSS0033836 Camellia sinensis var. sinensis HOM05D004132 ORTHO05D018840 1.5e-73 281.6 155 84.5
Cfa022583 Carpinus fangiana HOM05D004132 ORTHO05D006273 3.4e-65 253.8 543 33.5
Haze_26151 Corylus avellana HOM05D004132 ORTHO05D006273 2.0e-57 228.0 566 28.3
ECA233G2583 Erigeron canadensis HOM05D004132 ORTHO05D006273 2.0e-57 228.0 336 40.8
GSVIVG01020308001 Vitis vinifera HOM05D004132 ORTHO05D018522 2.2e-56 224.6 150 76.0
QL04p095492 Quercus lobata HOM05D004132 ORTHO05D018840 5.0e-53 213.4 218 53.7
Hma1.2p1_0634F.1_g192870 Hydrangea macrophylla HOM05D004132 ORTHO05D018840 4.4e-49 200.3 124 79.0
Rhsim01G0214100 Rhododendron simsii HOM05D004132 ORTHO05D018840 4.1e-47 193.7 112 79.5
Oeu050047.1 Olea europaea HOM05D004132 ORTHO05D018840 6.0e-46 189.9 121 76.0
HanXRQChr09g0260401 Helianthus annuus HOM05D004132 ORTHO05D018522 1.9e-44 184.9 129 70.5
Rhsim08G0147200 Rhododendron simsii HOM05D004132 ORTHO05D018840 2.5e-44 184.5 103 80.6
TAR627G1059 Trochodendron aralioides HOM05D004132 ORTHO05D006273 1.4e-42 178.7 160 58.8
SEGI_34381 Sequoiadendron giganteum HOM05D004132 ORTHO05D018522 1.8e-42 178.3 129 69.0
QL04p095610 Quercus lobata HOM05D004132 ORTHO05D018522 3.9e-29 134.0 165 48.5
Duzib212G0380 Durio zibethinus HOM05D004132 ORTHO05D035098 6.6e-29 133.3 187 47.1
Rhsim02G0198900 Rhododendron simsii HOM05D004132 ORTHO05D018840 1.8e-26 125.2 103 62.1
Duzib212G0992 Durio zibethinus HOM05D004132 ORTHO05D006273 2.4e-23 114.8 116 56.0
Rhsim06G0102600 Rhododendron simsii HOM05D004132 ORTHO05D018840 3.2e-23 114.4 66 81.8
BolC6t37679H Brassica oleracea HOM05D004132 ORTHO05D006273 5.4e-23 113.6 224 37.1
AL4G21280 Arabidopsis lyrata HOM05D004132 ORTHO05D000124 1.7e-21 108.6 78 66.7
arahy.Tifrunner.gnm1.ann1.0UIU5S Arachis hypogaea HOM05D004132 ORTHO05D018522 5.6e-20 103.6 52 86.5
BcaC09g51753 Brassica carinata HOM05D004132 ORTHO05D000912 1.6e-19 102.1 69 73.9
A07p23940 Brassica napus HOM05D000122 ORTHO05D000139 1.6e-19 102.1 189 37.0
TPR.G19642 Trifolium pratense HOM05D004132 ORTHO05D018522 8.1e-19 99.8 56 91.1
HanXRQChr09g0260421 Helianthus annuus HOM05D004132 ORTHO05D006273 9.9e-17 92.8 148 41.2
HanXRQChr16g0516741 Helianthus annuus HOM05D004132 ORTHO05D018522 6.4e-16 90.1 80 61.2
GSVIVG01020310001 Vitis vinifera HOM05D004132 ORTHO05D006273 2.3e-13 81.6 42 83.3
Hma1.2p1_0666F.1_g199485 Hydrangea macrophylla HOM05D004132 ORTHO05D006273 3.0e-13 81.3 43 81.4
RcHm_v2.0_Chr3g0486391 Rosa chinensis HOM05D004132 ORTHO05D006273 8.7e-13 79.7 75 57.3
Medtr8g046320 Medicago truncatula HOM05D004132 ORTHO05D261654 9.6e-12 76.3 62 59.7
GSVIVG01012128001 Vitis vinifera HOM05D004132 ORTHO05D006273 9.6e-12 76.3 105 47.6
HanXRQChr09g0260411 Helianthus annuus HOM05D004132 ORTHO05D006273 1.1e-10 72.8 40 80.0
arahy.Tifrunner.gnm1.ann1.DI7635 Arachis hypogaea HOM05D004132 ORTHO05D006273 3.1e-10 71.2 35 82.9
arahy.Tifrunner.gnm1.ann1.S74BYY Arachis hypogaea HOM05D004132 ORTHO05D006273 4.5e-09 67.4 35 82.9
TPR.G36491 Trifolium pratense HOM05D004132 ORTHO05D412263 6.0e-06 57.0 69 52.2


User provided reference genes

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