Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.4e-195 686.0 336 100.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-185 652.9 400 83.5
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.0e-121 438.7 287 79.4
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.6e-108 394.8 287 72.1
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.7e-103 380.2 287 70.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.0e-101 373.2 287 67.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.3e-100 370.5 285 67.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.6e-100 368.2 287 67.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.5e-99 367.1 285 67.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.3e-99 365.9 283 68.9
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.4e-97 360.5 310 62.6
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-97 360.1 280 67.5
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.0e-97 359.0 287 66.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.8e-97 358.2 285 65.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.9e-97 357.8 287 65.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-96 357.1 280 66.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.4e-96 355.9 280 67.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.4e-96 355.9 282 66.7
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.2e-95 353.2 315 61.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.9e-95 352.8 284 66.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.9e-95 352.1 280 67.1
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 4.9e-95 352.1 281 66.2
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 8.3e-95 351.3 280 66.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.4e-94 350.5 282 67.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.1e-94 349.0 280 66.4
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.1e-94 349.0 289 64.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 5.4e-94 348.6 279 64.9
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 7.0e-94 348.2 280 66.4
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.2e-93 347.4 281 65.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.7e-93 346.3 280 65.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 4.6e-93 345.5 279 66.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.0e-93 345.1 280 65.4
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.0e-92 344.4 280 65.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.3e-92 344.0 281 64.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.3e-92 344.0 281 65.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-92 343.6 262 69.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.3e-92 343.2 279 65.6
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.0e-92 342.8 283 64.3
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 5.0e-92 342.0 279 65.9
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 6.6e-92 341.7 281 63.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.6e-92 341.3 279 64.5
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 8.6e-92 341.3 280 63.9
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.1e-91 340.9 280 64.6
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-91 340.9 280 64.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.5e-91 339.7 280 64.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 3.3e-91 339.3 281 62.6
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 4.3e-91 339.0 276 64.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-91 339.0 285 62.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.6e-91 338.6 281 64.1
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.5e-91 337.8 279 64.9
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-90 337.4 287 63.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.6e-90 337.0 280 62.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.6e-90 337.0 283 61.8
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.6e-90 337.0 277 64.3
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.6e-90 337.0 279 64.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.6e-90 337.0 280 63.2
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.1e-90 336.7 287 64.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.1e-90 336.7 279 63.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.1e-90 336.7 286 64.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.8e-90 336.3 279 64.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.6e-90 335.9 276 64.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 3.6e-90 335.9 280 62.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.6e-90 335.9 280 63.6
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.7e-90 335.5 276 63.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 4.7e-90 335.5 279 64.2
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 8.0e-90 334.7 281 62.3
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.0e-90 334.7 285 64.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.1e-89 334.3 280 61.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.1e-89 334.3 279 63.1
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.1e-89 334.3 283 61.5
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-89 334.0 280 63.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.4e-89 334.0 276 63.0
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.4e-89 334.0 276 63.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.8e-89 333.6 275 63.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.8e-89 333.6 279 62.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.8e-89 333.6 281 61.6
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 2.3e-89 333.2 284 63.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.3e-89 333.2 279 62.4
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.3e-89 333.2 279 62.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.3e-89 333.2 280 62.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.1e-89 332.8 285 62.8
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.1e-89 332.8 280 62.5
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.1e-89 332.8 279 62.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.0e-89 332.4 280 62.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.2e-89 332.0 279 62.0
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 8.9e-89 331.3 280 62.1
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-88 330.5 287 63.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.5e-88 330.5 287 63.1
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.0e-88 330.1 283 60.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.0e-88 330.1 283 61.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.0e-88 330.1 276 62.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.0e-88 330.1 279 62.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.6e-88 329.7 282 63.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.4e-88 329.3 279 62.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.4e-88 328.9 281 63.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 4.4e-88 328.9 282 63.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 5.8e-88 328.6 281 60.9
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.3e-87 327.4 278 61.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-87 327.4 278 61.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-87 327.4 260 67.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.7e-87 327.0 276 63.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 3.7e-87 325.9 276 62.0
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.4e-86 323.9 295 59.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.9e-86 323.6 287 62.0
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.9e-86 323.6 281 60.9
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.2e-86 322.8 282 61.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 9.2e-86 321.2 280 61.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.6e-85 320.5 275 62.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.1e-85 320.1 310 56.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 4.6e-85 318.9 278 60.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 4.6e-85 318.9 262 65.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.6e-85 318.9 282 61.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.9e-84 315.8 280 60.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.1e-83 314.3 260 64.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-83 313.9 278 59.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.5e-83 313.2 275 60.7
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.2e-82 310.8 274 60.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.6e-82 309.3 285 58.6
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.6e-82 309.3 280 58.2
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.7e-82 308.9 260 63.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 6.2e-82 308.5 485 42.5
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.1e-82 308.1 260 62.3
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.0e-81 305.8 272 60.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 5.2e-81 305.4 286 57.0
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.8e-81 305.1 260 64.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-79 300.1 262 62.6
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.4e-78 295.4 262 61.5
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 9.2e-78 294.7 281 59.1
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 4.6e-77 292.4 263 61.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 6.2e-74 282.0 257 57.2
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.0e-68 263.1 278 53.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 2.6e-64 250.0 216 62.0
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 3.4e-64 249.6 277 52.7
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.4e-64 249.6 217 61.8
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.6e-64 248.4 281 48.4
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.9e-63 246.5 279 49.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.1e-62 244.6 271 53.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 2.7e-61 240.0 207 61.8
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.3e-60 237.7 285 46.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.3e-59 233.0 282 46.1
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-56 224.6 223 56.5
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.0e-52 209.9 214 54.7
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.9e-47 192.6 177 58.8
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.7e-45 186.8 108 83.3
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.3e-44 184.5 108 80.6
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.6e-40 170.2 108 79.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.0e-39 166.0 304 36.8
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.5e-38 163.7 241 43.2
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.2e-37 161.4 117 71.8
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 4.2e-30 136.3 308 35.1
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 9.4e-30 135.2 108 63.0
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 6.9e-25 119.0 65 86.2
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 7.7e-24 115.5 63 84.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-23 115.2 64 81.2
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 6.1e-21 105.9 64 75.0
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-18 98.2 73 67.1
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.2e-18 95.5 63 71.4
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.1e-17 95.1 57 82.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.1e-17 95.1 271 30.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.5e-16 90.1 57 73.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.9e-15 87.0 278 29.5
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.1e-14 85.1 307 26.7
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.2e-14 83.2 181 33.1


User provided reference genes

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