Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 8.0e-140 500.4 244 100.0
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 7.5e-130 467.2 233 97.4
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 3.1e-115 418.7 233 86.3
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 2.2e-113 412.5 232 87.5
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 2.8e-108 395.6 232 81.0
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 2.8e-108 395.6 232 82.3
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 9.0e-107 390.6 233 80.3
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 2.0e-106 389.4 235 78.3
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.0e-106 389.4 235 78.3
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 9.9e-106 387.1 230 83.0
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 9.9e-106 387.1 230 80.9
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 8.4e-105 384.0 232 78.4
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 1.4e-104 383.3 233 77.7
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 4.2e-104 381.7 232 77.2
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.2e-103 380.2 232 78.4
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.7e-103 379.0 250 73.6
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 4.6e-103 378.3 232 79.7
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 6.0e-103 377.9 228 80.7
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 6.0e-103 377.9 232 76.7
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 7.9e-103 377.5 232 79.3
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 7.9e-103 377.5 234 76.9
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 1.0e-102 377.1 232 79.3
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 1.8e-102 376.3 232 76.7
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 3.0e-102 375.6 229 79.9
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 8.7e-102 374.0 232 77.6
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 1.9e-101 372.9 232 77.2
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 4.3e-101 371.7 232 77.6
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 5.6e-101 371.3 233 75.1
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 7.4e-101 370.9 233 75.5
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 9.6e-101 370.5 232 75.0
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.3e-100 370.2 250 72.4
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 1.3e-100 370.2 232 75.4
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 2.8e-100 369.0 235 76.6
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 3.7e-100 368.6 229 78.2
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 1.4e-99 366.7 252 72.2
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 1.8e-99 366.3 232 76.3
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 2.4e-99 365.9 232 76.3
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 2.4e-99 365.9 238 73.9
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 3.1e-99 365.5 230 77.8
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 4.5e-98 361.7 231 74.5
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 5.8e-98 361.3 227 78.4
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 1.3e-97 360.1 233 76.0
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.3e-97 360.1 233 74.7
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 4.9e-97 358.2 237 74.3
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 8.4e-97 357.5 232 75.4
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 1.4e-96 356.7 233 74.7
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 1.4e-96 356.7 234 71.4
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 1.4e-96 356.7 231 76.2
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 3.2e-96 355.5 230 76.1
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 5.5e-96 354.8 233 75.5
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 7.1e-96 354.4 232 75.4
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 9.3e-96 354.0 237 74.7
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 1.2e-95 353.6 231 74.9
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 1.2e-95 353.6 233 73.0
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 1.6e-95 353.2 233 72.5
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 2.7e-95 352.4 233 68.2
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 3.5e-95 352.1 233 72.1
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 4.6e-95 351.7 235 71.9
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 4.6e-95 351.7 232 74.1
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 4.6e-95 351.7 230 75.7
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 6.0e-95 351.3 236 72.9
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 7.9e-95 350.9 232 74.6
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 7.9e-95 350.9 232 73.3
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 7.9e-95 350.9 232 74.6
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 7.9e-95 350.9 232 73.3
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 2.3e-94 349.4 232 74.1
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 2.3e-94 349.4 239 71.1
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 3.0e-94 349.0 237 69.6
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 6.7e-94 347.8 229 72.1
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 8.7e-94 347.4 232 72.0
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.5e-93 346.7 233 70.8
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 1.9e-93 346.3 227 74.0
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 2.5e-93 345.9 232 72.4
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 2.5e-93 345.9 227 74.0
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 3.3e-93 345.5 229 70.7
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 3.3e-93 345.5 233 67.8
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 4.3e-93 345.1 241 68.5
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 1.3e-92 343.6 232 71.6
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 1.6e-92 343.2 229 69.0
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 2.1e-92 342.8 232 71.1
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 2.8e-92 342.4 233 70.8
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 6.2e-92 341.3 232 71.1
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 1.1e-91 340.5 235 68.5
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 6.9e-91 337.8 233 67.0
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.5e-90 336.7 235 68.1
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 2.0e-90 336.3 230 70.9
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 2.6e-90 335.9 235 67.7
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 5.8e-90 334.7 206 80.1
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 2.9e-89 332.4 232 69.0
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 2.5e-88 329.3 225 72.9
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 1.3e-86 323.6 201 77.1
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 3.3e-85 318.9 215 72.6
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 4.8e-84 315.1 233 67.0
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 1.2e-82 310.5 233 64.4
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 7.6e-82 307.8 234 66.7
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 9.4e-80 300.8 231 65.8
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 9.4e-80 300.8 202 72.8
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 1.8e-78 296.6 229 61.1
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 4.3e-77 292.0 204 68.6
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.4e-75 287.0 235 60.0
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 1.4e-75 287.0 235 60.0
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 5.9e-74 281.6 238 61.3
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 2.3e-70 269.6 162 79.0
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 3.9e-70 268.9 233 57.5
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 6.3e-68 261.5 248 53.6
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 5.9e-66 255.0 232 57.3
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 7.2e-64 248.1 231 52.8
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.2e-63 247.3 231 51.9
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 4.7e-63 245.4 232 55.6
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 1.4e-62 243.8 200 63.5
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 4.1e-59 232.3 184 58.7
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 1.4e-54 217.2 216 49.1
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.6e-53 213.0 149 69.8
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.3e-52 210.7 238 46.6
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 1.9e-48 196.8 236 44.5
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 8.8e-46 188.0 233 42.9
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 3.4e-45 186.0 237 47.7
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 9.5e-40 167.9 112 74.1
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 2.8e-39 166.4 99 82.8
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 3.3e-32 142.9 220 35.9
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.9e-28 129.8 218 37.2
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 6.8e-14 82.0 133 37.6
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.2e-13 81.3 71 56.3
C09p32920 Brassica napus HOM05D005670 ORTHO05D031838 2.6e-13 80.1 54 74.1
BolC9t56127H Brassica oleracea HOM05D005670 ORTHO05D031838 2.6e-13 80.1 54 74.1
BcaC04g21348 Brassica carinata HOM05D005670 ORTHO05D031838 4.4e-13 79.3 50 78.0
Rhsim02G0011400 Rhododendron simsii HOM05D005670 ORTHO05D007612 4.4e-13 79.3 68 61.8
SHI01971 Sapria himalayana HOM05D005670 ORTHO05D007612 2.7e-10 70.1 53 67.9
Haze_26134 Corylus avellana HOM05D003658 ORTHO05D004457 6.0e-10 68.9 146 34.9
FAN18G2143 Fragaria x ananassa HOM05D005670 ORTHO05D206520 2.1e-07 60.5 41 68.3


User provided reference genes

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