Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05648 Corylus avellana HOM05D005567 ORTHO05D005651 9.1e-214 746.9 448 100.0
Cfa000907 Carpinus fangiana HOM05D005567 ORTHO05D005651 8.4e-119 431.4 438 59.1
CiPaw.09G120700 Carya illinoinensis HOM05D005567 ORTHO05D005651 7.2e-102 375.2 441 51.9
QL05p055424 Quercus lobata HOM05D005567 ORTHO05D005651 3.6e-93 346.3 441 49.0
Manes.15G124500 Manihot esculenta HOM05D005567 ORTHO05D005651 7.0e-89 332.0 441 46.9
CANSAT35G1600 Cannabis sativa HOM05D005567 ORTHO05D005651 1.5e-88 330.9 442 48.0
Actinidia13449 Actinidia chinensis HOM05D005567 ORTHO05D005651 3.5e-88 329.7 435 47.8
GSVIVG01021538001 Vitis vinifera HOM05D005567 ORTHO05D005651 1.0e-87 328.2 435 46.7
Atru.chr10.1112 Acer truncatum HOM05D005567 ORTHO05D005651 5.0e-87 325.9 429 47.3
Dinv32216 Davidia involucrata HOM05D005567 ORTHO05D005651 1.1e-86 324.7 441 47.6
Rhsim13G0117000 Rhododendron simsii HOM05D005567 ORTHO05D005651 2.5e-86 323.6 441 47.4
TAR626G1087 Trochodendron aralioides HOM05D005567 ORTHO05D005651 2.5e-86 323.6 441 46.5
Thecc.06G145300 Theobroma cacao HOM05D005567 ORTHO05D005651 9.4e-86 321.6 437 46.5
Potri.004G158000 Populus trichocarpa HOM05D005567 ORTHO05D005651 1.2e-85 321.2 436 46.8
Rhsim11G0051300 Rhododendron simsii HOM05D005567 ORTHO05D005651 1.6e-85 320.9 441 47.2
MD05G1280500 Malus domestica HOM05D005567 ORTHO05D005651 8.0e-85 318.5 419 47.3
Ciclev10025380m.g Citrus clementina HOM05D005567 ORTHO05D005651 1.8e-84 317.4 437 46.0
PGR035G0006 Punica granatum HOM05D005567 ORTHO05D005651 1.1e-83 314.7 434 45.6
Eucgr.E02430 Eucalyptus grandis HOM05D005567 ORTHO05D005651 1.5e-83 314.3 427 46.4
PGR031G2076 Punica granatum HOM05D005567 ORTHO05D005651 1.5e-83 314.3 437 45.5
MELO3C007111.2 Cucumis melo HOM05D005567 ORTHO05D005651 5.7e-83 312.4 437 46.0
TWI73G0487 Tripterygium wilfordii HOM05D005567 ORTHO05D005651 5.7e-83 312.4 438 45.2
Gorai.009G153000 Gossypium raimondii HOM05D005567 ORTHO05D005651 1.7e-82 310.8 424 46.5
CsaV3_6G051950 Cucumis sativus L. HOM05D005567 ORTHO05D005651 2.2e-82 310.5 437 46.0
Lj2C923G5 Lonicera japonica HOM05D005567 ORTHO05D005651 2.8e-82 310.1 435 45.7
Hma1.2p1_1794F.1_g302670 Hydrangea macrophylla HOM05D005567 ORTHO05D005651 4.8e-82 309.3 435 45.7
Oeu040093.1 Olea europaea HOM05D005567 ORTHO05D005651 8.2e-82 308.5 429 44.8
Duzib192G0463 Durio zibethinus HOM05D005567 ORTHO05D005651 1.8e-81 307.4 440 45.0
Gohir.A05G146500 Gossypium hirsutum HOM05D005567 ORTHO05D005651 4.1e-81 306.2 424 46.5
Sed0009662 Sechium edule HOM05D005567 ORTHO05D005651 1.0e-79 301.6 439 45.3
Oeu054932.1 Olea europaea HOM05D005567 ORTHO05D005651 1.3e-79 301.2 451 43.2
MSTRG.16261 Avicennia marina HOM05D005567 ORTHO05D005651 2.9e-79 300.1 434 43.1
Hund17759 Selenicereus undatus HOM05D005567 ORTHO05D005651 2.9e-79 300.1 438 44.3
Cc11_g02850 Coffea canephora HOM05D005567 ORTHO05D005651 1.9e-78 297.4 416 45.7
Sc05g0006010 Simmondsia chinensis HOM05D005567 ORTHO05D005651 1.9e-78 297.4 437 44.2
COL.COLO4_31019 Corchorus olitorius HOM05D005567 ORTHO05D005651 9.4e-78 295.0 401 46.1
Sopen07g002020 Solanum pennellii HOM05D005567 ORTHO05D005651 8.0e-77 292.0 428 42.8
CAN.G160.8 Capsicum annuum HOM05D005567 ORTHO05D005651 5.2e-76 289.3 428 42.3
Nn3g20454 Nelumbo nucifera HOM05D005567 ORTHO05D005651 5.2e-76 289.3 432 44.4
PGSC0003DMG400022975 Solanum tuberosum HOM05D005567 ORTHO05D005651 6.8e-76 288.9 428 42.3
Peaxi162Scf00401g00029 Petunia axillaris HOM05D005567 ORTHO05D005651 2.0e-75 287.3 428 43.0
Solyc07g005890.3 Solanum lycopersicum HOM05D005567 ORTHO05D005651 5.7e-75 285.8 428 42.1
RcHm_v2.0_Chr5g0014641 Rosa chinensis HOM05D005567 ORTHO05D005651 7.5e-75 285.4 441 41.5
HanXRQChr13g0422501 Helianthus annuus HOM05D005567 ORTHO05D005651 9.7e-75 285.0 432 43.5
ECA240G2278 Erigeron canadensis HOM05D005567 ORTHO05D005651 1.3e-74 284.6 435 42.8
FAN25G0576 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.3e-74 284.6 438 42.2
Lj2C924T4 Lonicera japonica HOM05D005567 ORTHO05D005651 3.7e-74 283.1 404 44.8
SGA_v2.0_scaffold1G00200 Striga asiatica HOM05D005567 ORTHO05D005651 8.3e-74 282.0 424 43.6
DCAR_003891 Daucus carota HOM05D005567 ORTHO05D005651 1.4e-73 281.2 429 42.2
Cpa.g.sc17.43 Carica papaya HOM05D005567 ORTHO05D005651 2.4e-73 280.4 433 43.2
FAN16G1390 Fragaria x ananassa HOM05D005567 ORTHO05D005651 7.0e-73 278.9 439 41.2
FvH4_3g05121 Fragaria vesca HOM05D005567 ORTHO05D005651 1.6e-72 277.7 439 40.8
FAN21G1630 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.6e-72 277.7 440 41.1
FAN16G0453 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-71 274.2 423 41.4
CSS0008572 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 6.5e-71 272.3 435 43.2
MBI18_g03007_MAGBIO Magnolia biondii HOM05D005567 ORTHO05D005651 1.1e-70 271.6 417 42.0
Lsat_1_v5_gn_3_121441 Lactuca sativa HOM05D005567 ORTHO05D005651 5.5e-70 269.2 420 41.7
Thhalv10024904m.g Eutrema salsugineum HOM05D005567 ORTHO05D005651 9.4e-70 268.5 437 40.0
AT4G15850 Arabidopsis thaliana HOM05D005567 ORTHO05D005651 1.6e-69 267.7 437 40.0
AL7G39430 Arabidopsis lyrata HOM05D005567 ORTHO05D005651 2.1e-69 267.3 437 39.8
CARHR290380 Cardamine hirsuta HOM05D005567 ORTHO05D005651 2.1e-69 267.3 437 39.8
Lj4g0007029 Lotus japonicus HOM05D005567 ORTHO05D005651 2.1e-69 267.3 438 40.2
Prupe.4G084900 Prunus persica HOM05D005567 ORTHO05D005651 2.7e-69 266.9 353 47.9
Sp7g14250 Schrenkiella parvula HOM05D005567 ORTHO05D005651 1.8e-68 264.2 437 39.4
Carub.0007s2580 Capsella rubella HOM05D005567 ORTHO05D005651 2.3e-68 263.8 437 40.3
FAN11G3281 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.2e-67 261.5 439 39.4
Migut.M00885 Erythranthe guttata HOM05D005567 ORTHO05D005651 2.6e-67 260.4 433 39.7
Nitab4.5_0002611g0120 Nicotiana tabacum HOM05D005567 ORTHO05D005651 7.5e-67 258.8 433 41.1
Hund12175 Selenicereus undatus HOM05D005567 ORTHO05D005651 1.3e-66 258.1 437 41.2
CSS0035269 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 2.2e-66 257.3 439 41.7
Aa31LG10G6270 Aethionema arabicum HOM05D002639 ORTHO05D005651 3.7e-66 256.5 433 39.5
Gohir.D05G149000 Gossypium hirsutum HOM05D005567 ORTHO05D005651 6.3e-66 255.8 435 41.4
THA.LOC104802575 Tarenaya hassleriana HOM05D005567 ORTHO05D005651 3.1e-65 253.4 432 39.4
A01p21660 Brassica napus HOM05D005567 ORTHO05D005651 1.7e-63 247.7 438 37.9
BraA01t02075Z Brassica rapa HOM05D005567 ORTHO05D005651 1.7e-63 247.7 438 37.9
BcaC09g50282 Brassica carinata HOM05D005567 ORTHO05D005651 5.0e-63 246.1 442 37.8
C01p27020 Brassica napus HOM05D005567 ORTHO05D005651 5.0e-63 246.1 442 37.8
BolC1t02650H Brassica oleracea HOM05D005567 ORTHO05D005651 5.0e-63 246.1 442 37.8
Lalb_Chr02g0156151 Lupinus albus HOM05D005567 ORTHO05D005651 1.5e-62 244.6 417 38.4
Medtr5g077690 Medicago truncatula HOM05D005567 ORTHO05D005651 1.5e-62 244.6 416 39.2
Os02g0795900 Oryza sativa ssp. japonica HOM05D005567 ORTHO05D005651 1.5e-62 244.6 427 38.4
Medtr8g079462 Medicago truncatula HOM05D005567 ORTHO05D005651 3.3e-62 243.4 416 39.2
Aqoxy5G03882 Aquilegia oxysepala HOM05D005567 ORTHO05D005651 7.2e-62 242.3 421 39.7
Psat7g080400 Pisum sativum HOM05D005567 ORTHO05D005651 9.5e-62 241.9 416 38.5
BcaNung00240 Brassica carinata HOM05D005567 ORTHO05D005651 3.6e-61 240.0 436 37.6
CDE11G0998 Ceratophyllum demersum HOM05D005567 ORTHO05D005651 4.7e-61 239.6 437 37.8
arahy.Tifrunner.gnm1.ann1.EWV0WN Arachis hypogaea HOM05D005567 ORTHO05D005651 1.0e-60 238.4 422 37.7
AUR62031319 Chenopodium quinoa HOM05D005567 ORTHO05D005651 2.0e-59 234.2 437 38.0
Ah.14g086310 Amaranthus hybridus HOM05D005567 ORTHO05D005651 7.5e-59 232.3 439 38.3
PGSC0003DMG401011204 Solanum tuberosum HOM05D005567 ORTHO05D005651 1.7e-58 231.1 348 40.5
Zm00001eb257820 Zea mays HOM05D005567 ORTHO05D005651 2.2e-58 230.7 427 37.5
arahy.Tifrunner.gnm1.ann1.JRZ00F Arachis hypogaea HOM05D005567 ORTHO05D005651 1.2e-56 224.9 423 37.8
AUR62027404 Chenopodium quinoa HOM05D005567 ORTHO05D005651 3.9e-55 219.9 433 36.5
PGR031G1497 Punica granatum HOM05D005567 ORTHO05D005651 6.1e-53 212.6 229 53.3
EL10Ac8g19315 Beta vulgaris HOM05D005567 ORTHO05D005651 1.4e-52 211.5 437 36.2
HPP92_028168 Vanilla planifolia HOM05D005567 ORTHO05D005651 1.5e-51 208.0 432 35.4
PSO339G4780 Papaver somniferum HOM05D005567 ORTHO05D005651 2.0e-51 207.6 429 36.6
SEGI_23194 Sequoiadendron giganteum HOM05D005567 ORTHO05D005651 3.4e-51 206.8 421 34.7
PSO675G8008 Papaver somniferum HOM05D005567 ORTHO05D005651 1.3e-50 204.9 440 36.4
PSO541G2802 Papaver somniferum HOM05D005567 ORTHO05D005651 4.9e-50 203.0 429 36.1
PSO384G1189 Papaver somniferum HOM05D005567 ORTHO05D005651 2.4e-49 200.7 429 35.9
Phvul.002G179500 Phaseolus vulgaris HOM05D005567 ORTHO05D005651 1.6e-48 198.0 408 35.3
Glyma.08G231300 Glycine max HOM05D005567 ORTHO05D005651 3.9e-47 193.4 423 34.3
VMungo0251G3629 Vigna mungo HOM05D005567 ORTHO05D005651 8.6e-47 192.2 402 34.8
ClCG01G024830 Citrullus lanatus HOM05D005567 ORTHO05D005651 9.2e-41 172.2 236 48.7
Glyma.14G114900 Glycine max HOM05D005567 ORTHO05D005651 1.9e-38 164.5 422 31.8
SMO139G0134 Selaginella moellendorffii HOM05D005567 ORTHO05D005651 2.8e-37 160.6 416 30.3
SGA_v2.0_scaffold58G20438 Striga asiatica HOM05D005567 ORTHO05D005651 1.1e-36 158.7 228 45.6
Mapoly0149s0031 Marchantia polymorpha HOM05D017422 ORTHO05D005651 5.2e-36 156.4 439 29.8
CAN.G2122.3 Capsicum annuum HOM05D005567 ORTHO05D005651 6.8e-36 156.0 104 71.2
Nitab4.5_0003551g0060 Nicotiana tabacum HOM05D005567 ORTHO05D005651 2.6e-35 154.1 104 70.2
CSS0049309 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 3.4e-35 153.7 104 74.0
vmacro03436 Vaccinium macrocarpon HOM05D005567 ORTHO05D005651 7.6e-35 152.5 378 33.9
ATR0661G350 Amborella trichopoda HOM05D000032 ORTHO05D005651 1.4e-33 148.3 222 42.3
MBI18_g03006_MAGBIO Magnolia biondii HOM05D001150 ORTHO05D000998 4.3e-30 136.7 154 52.6
TPR.G21614 Trifolium pratense HOM05D002142 ORTHO05D005651 7.3e-30 136.0 277 33.6
AagrBONN_evm.TU.Sc2ySwM_344.3570 Anthoceros agrestis HOM05D005567 ORTHO05D005651 3.6e-29 133.7 378 27.0
QL05p055405 Quercus lobata HOM05D000148 ORTHO05D000081 4.7e-29 133.3 143 53.1
Pp3c6_13920 Physcomitrium patens HOM05D005567 ORTHO05D005651 8.4e-26 122.5 434 26.7
ATR0661G527 Amborella trichopoda HOM05D005567 ORTHO05D005651 5.4e-25 119.8 111 59.5
Oeu008947.1 Olea europaea HOM05D005567 ORTHO05D005651 3.6e-21 107.1 62 83.9
Nitab4.5_0003551g0070 Nicotiana tabacum HOM05D000032 ORTHO05D005651 9.0e-20 102.4 105 55.2
SHI38399 Sapria himalayana HOM05D005567 ORTHO05D005651 8.4e-18 95.9 105 51.4
RcHm_v2.0_Chr5g0014661 Rosa chinensis HOM05D005567 ORTHO05D005651 1.4e-17 95.1 96 53.1
TPR.G9554 Trifolium pratense HOM05D005567 ORTHO05D005651 4.2e-17 93.6 80 58.8
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 4.3e-14 83.6 104 46.2
Mapoly0138s0049 Marchantia polymorpha HOM05D005567 ORTHO05D005651 7.3e-14 82.8 223 28.7
Cre07.g319750 Chlamydomonas reinhardtii HOM05D005567 ORTHO05D005651 9.6e-14 82.4 368 25.3
Mapoly0054s0099 Marchantia polymorpha HOM05D005567 ORTHO05D005651 2.8e-13 80.9 251 27.1
Mapoly3267s0001 Marchantia polymorpha HOM05D000032 ORTHO05D005651 2.0e-11 74.7 83 47.0
CBR_g39259 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-10 71.2 112 37.5
Mapoly0138s0050 Marchantia polymorpha HOM05D005567 ORTHO05D005651 1.2e-08 65.5 77 44.2
Zm00001eb195690 Zea mays HOM05D002718 ORTHO05D444050 1.6e-08 65.1 87 43.7
Actinidia33658 Actinidia chinensis HOM05D005567 ORTHO05D005651 2.1e-08 64.7 62 58.1
HPP92_002272 Vanilla planifolia HOM05D000032 ORTHO05D004142 1.9e-06 58.2 139 31.7
Lj2A322G63 Lonicera japonica HOM05D005567 ORTHO05D005651 2.5e-06 57.8 44 61.4
Mapoly0116s0020 Marchantia polymorpha HOM05D000032 ORTHO05D004142 2.5e-06 57.8 135 31.1
TPR.G15184 Trifolium pratense HOM05D000032 ORTHO05D004142 2.5e-06 57.8 136 33.1
Actinidia33657 Actinidia chinensis HOM05D005567 ORTHO05D005651 5.6e-06 56.6 43 60.5


User provided reference genes

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