Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 2.0e-156 555.8 309 100.0
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 3.8e-78 295.8 314 61.1
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.0e-74 283.5 258 65.9
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.1e-72 277.7 262 61.1
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 5.9e-71 271.9 317 55.8
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 2.9e-70 269.6 318 53.1
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 8.5e-70 268.1 269 61.7
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 1.9e-69 266.9 268 61.6
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 3.2e-69 266.2 253 62.5
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 5.5e-69 265.4 314 54.5
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 7.2e-69 265.0 314 53.2
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 2.1e-68 263.5 274 56.9
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.6e-68 262.7 226 65.9
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 6.1e-68 261.9 292 55.5
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 8.0e-68 261.5 268 61.9
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.0e-67 261.2 231 63.2
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 4.0e-67 259.2 310 54.5
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 4.0e-67 259.2 225 65.8
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 8.8e-67 258.1 258 60.1
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 8.8e-67 258.1 253 60.5
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-66 257.7 322 53.7
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.1e-66 257.7 322 53.7
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 1.1e-66 257.7 226 65.0
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 2.0e-66 256.9 253 58.5
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.4e-66 255.8 230 62.6
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 4.4e-66 255.8 230 62.6
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 7.5e-66 255.0 230 62.6
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 7.5e-66 255.0 230 64.3
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 1.3e-65 254.2 231 62.8
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 1.3e-65 254.2 321 52.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.2e-65 253.4 258 55.8
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 4.8e-65 252.3 310 51.9
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 1.1e-64 251.1 233 61.8
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.4e-64 250.8 226 61.5
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 2.4e-64 250.0 234 62.4
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 4.1e-64 249.2 294 53.4
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 4.1e-64 249.2 253 59.3
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 4.1e-64 249.2 327 55.0
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 9.1e-64 248.1 267 55.4
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.2e-63 247.7 231 60.6
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 3.5e-63 246.1 229 61.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 7.7e-63 245.0 231 61.5
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.3e-62 244.2 241 59.8
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.2e-62 243.4 281 54.8
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.2e-62 243.4 267 58.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-61 241.1 230 60.0
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.5e-61 240.7 228 59.6
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.9e-61 240.4 254 57.5
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 2.5e-61 240.0 331 51.7
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 3.2e-61 239.6 230 59.1
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 3.2e-61 239.6 235 60.0
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 5.5e-61 238.8 235 58.7
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.6e-60 237.3 156 80.1
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.6e-60 237.3 227 59.5
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.7e-60 236.5 227 60.4
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.4e-59 234.2 305 47.5
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.3e-59 233.4 233 58.8
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.0e-59 233.0 220 59.1
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 3.0e-59 233.0 332 52.1
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 6.8e-59 231.9 227 58.1
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 1.5e-58 230.7 227 58.6
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 2.6e-58 229.9 228 58.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 2.6e-58 229.9 228 58.3
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 2.6e-58 229.9 228 58.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 2.6e-58 229.9 228 58.3
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 2.6e-58 229.9 228 57.9
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 7.5e-58 228.4 228 58.3
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 9.8e-58 228.0 254 55.1
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.4e-56 224.2 219 56.6
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 2.4e-56 223.4 275 53.5
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.1e-56 223.0 219 57.5
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 5.4e-56 222.2 147 75.5
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 7.0e-56 221.9 266 54.1
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 7.0e-56 221.9 219 57.1
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.1e-56 221.5 219 57.1
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.2e-55 221.1 183 66.7
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 1.0e-54 218.0 248 53.6
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 5.0e-54 215.7 151 70.9
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 8.5e-54 214.9 195 62.6
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.2e-52 211.1 225 56.0
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 2.1e-52 210.3 204 59.3
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.0e-51 208.0 218 58.7
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 1.4e-51 207.6 189 60.3
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.0e-51 206.5 174 66.7
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.2e-50 204.5 218 55.5
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 1.5e-50 204.1 212 55.2
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.7e-49 199.5 196 60.7
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 7.7e-47 191.8 323 44.0
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 6.1e-44 182.2 203 52.2
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.4e-42 176.4 137 67.9
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 4.4e-42 176.0 183 58.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 5.7e-42 175.6 265 46.8
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.2e-40 169.9 121 71.9
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 4.1e-40 169.5 262 42.4
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 1.2e-39 167.9 270 42.2
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 1.6e-39 167.5 229 50.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.0e-38 163.3 217 47.5
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.3e-33 147.9 152 54.6
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 6.4e-33 145.6 156 54.5
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 1.6e-31 141.0 110 64.5
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.3e-30 137.9 127 61.4
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 3.3e-29 133.3 88 75.0
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.3e-25 121.3 76 80.3
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 2.2e-25 120.6 152 48.0
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 4.6e-23 112.8 193 42.0
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.3e-22 111.3 108 67.6
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.0e-22 110.2 167 46.7
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 3.0e-22 110.2 92 59.8
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 1.2e-20 104.8 193 41.5
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 8.1e-20 102.1 66 78.8
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.1e-19 101.7 153 48.4
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.9e-16 90.9 66 74.2
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 1.2e-15 88.2 134 43.3
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 1.2e-15 88.2 217 35.9
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 6.0e-15 85.9 174 37.4
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 3.9e-14 83.2 232 31.9
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 6.6e-14 82.4 65 63.1
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 5.6e-13 79.3 97 47.4
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 6.9e-11 72.4 132 42.4
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 2.2e-09 67.4 87 46.0
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 4.9e-09 66.2 47 66.0
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 8.4e-09 65.5 43 72.1
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-08 65.1 55 60.0


User provided reference genes

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