Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.0e-102 377.1 245 100.0
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.8e-54 216.9 161 76.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.7e-53 211.8 162 73.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 2.8e-52 209.5 161 72.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.4e-51 206.5 257 56.0
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.1e-51 206.1 257 62.3
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 3.1e-51 206.1 257 62.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 5.4e-51 205.3 272 61.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.2e-50 204.1 267 58.4
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.7e-50 203.0 266 64.7
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.5e-50 202.6 269 62.5
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.9e-50 201.8 243 52.7
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 5.9e-50 201.8 260 58.8
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 7.8e-50 201.4 247 64.4
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.9e-49 199.5 265 48.7
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 3.8e-49 199.1 272 61.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 8.6e-49 198.0 262 55.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-48 197.6 241 52.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.1e-48 197.6 243 59.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 1.1e-48 197.6 243 59.7
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.1e-48 197.6 243 64.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.5e-48 197.2 271 57.9
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.5e-48 197.2 263 57.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.5e-48 196.4 271 62.7
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.5e-48 196.4 271 62.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.5e-48 196.4 260 55.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.5e-48 196.4 256 62.1
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.5e-48 196.4 261 55.2
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.3e-48 196.1 265 50.9
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.3e-48 196.1 265 50.9
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.3e-48 196.1 262 57.3
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.5e-48 194.5 162 66.7
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 9.5e-48 194.5 252 58.3
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.5e-48 194.5 244 52.5
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-47 194.1 265 52.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.2e-47 194.1 265 50.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.2e-47 194.1 247 56.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.6e-47 193.7 162 67.9
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 2.1e-47 193.4 248 65.7
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.8e-47 193.0 265 50.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 2.8e-47 193.0 262 64.1
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.6e-47 192.6 241 53.9
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.6e-47 192.6 258 50.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 3.6e-47 192.6 255 53.3
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.7e-47 192.2 254 54.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.7e-47 192.2 258 55.0
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 8.0e-47 191.4 262 56.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 8.0e-47 191.4 157 67.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 8.0e-47 191.4 249 65.1
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.0e-46 191.0 161 66.5
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.4e-46 190.7 258 52.7
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.4e-46 190.7 249 59.8
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.4e-46 190.7 244 61.9
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.8e-46 190.3 246 55.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.8e-46 190.3 246 57.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.3e-46 189.9 244 54.9
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.3e-46 189.9 162 65.4
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-46 189.5 245 55.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 3.0e-46 189.5 242 52.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 4.0e-46 189.1 243 51.4
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 5.2e-46 188.7 261 48.3
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.2e-46 188.7 264 51.9
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 5.2e-46 188.7 162 65.4
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.2e-46 188.7 161 63.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 6.8e-46 188.3 259 52.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 6.8e-46 188.3 202 55.9
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.8e-46 188.3 252 53.6
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.8e-46 188.3 262 50.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.8e-46 188.3 166 64.5
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.2e-45 187.6 245 65.3
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.2e-45 187.6 248 54.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.5e-45 187.2 162 66.0
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.5e-45 187.2 241 52.7
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.5e-45 187.2 241 50.6
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.0e-45 186.8 246 59.8
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.6e-45 186.4 248 50.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.6e-45 186.4 262 52.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.6e-45 186.4 249 58.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 4.4e-45 185.7 255 52.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 5.7e-45 185.3 256 52.0
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 5.7e-45 185.3 161 65.2
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.3e-44 184.1 161 63.4
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.3e-44 184.1 161 64.6
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.2e-44 183.3 106 88.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 6.4e-44 181.8 254 51.6
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.3e-44 181.4 162 61.7
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 8.3e-44 181.4 162 61.7
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 8.3e-44 181.4 162 61.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 8.3e-44 181.4 159 65.4
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-43 181.0 162 61.7
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.1e-43 181.0 257 59.5
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.4e-43 180.6 245 57.6
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-43 180.3 162 61.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.8e-43 180.3 161 62.1
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 4.1e-43 179.1 105 86.7
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 5.4e-43 178.7 241 51.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 7.0e-43 178.3 241 49.0
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.2e-43 177.9 256 52.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 9.2e-43 177.9 248 50.8
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 9.2e-43 177.9 155 63.9
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.6e-42 177.2 162 60.5
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.7e-42 176.4 160 60.6
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.7e-42 176.4 160 60.6
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.5e-42 176.0 160 60.0
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 7.8e-42 174.9 160 60.0
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.0e-41 174.5 249 49.4
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.3e-41 173.3 250 52.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 5.0e-41 172.2 249 53.8
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.9e-40 170.2 111 80.2
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 3.3e-40 169.5 251 49.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 3.6e-39 166.0 232 51.7
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.1e-38 164.5 169 56.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.0e-38 162.5 228 60.1
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.2e-37 161.0 224 48.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.4e-37 159.1 109 80.7
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.3e-36 157.5 95 78.9
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.7e-36 156.0 104 77.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.9e-35 153.7 127 65.4
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.2e-34 151.0 125 62.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.2e-34 151.0 105 70.5
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 6.0e-34 148.7 109 68.8
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.0e-33 147.9 109 68.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 2.3e-33 146.7 106 72.6
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 6.6e-33 145.2 107 72.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 6.6e-33 145.2 105 67.6
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.5e-32 143.3 107 71.0
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 9.5e-32 141.4 106 67.0
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.7e-31 139.0 241 57.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-29 134.0 168 50.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 9.9e-29 131.3 159 50.9
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.9e-28 129.8 84 78.6
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 4.9e-28 129.0 136 56.6
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.1e-27 127.9 230 60.0
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 5.4e-27 125.6 105 62.9
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 9.2e-27 124.8 252 41.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 9.2e-27 124.8 252 41.3
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-26 124.4 162 50.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.2e-26 124.4 103 57.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.7e-25 120.6 84 71.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-25 119.8 200 47.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.3e-24 116.3 163 46.6
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 3.6e-23 112.8 236 41.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 8.9e-22 108.2 79 72.2
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 8.9e-22 108.2 212 44.8
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-21 107.5 78 74.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 7.6e-21 105.1 203 48.8
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.8e-14 84.0 90 53.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.4e-14 83.6 48 81.2
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 5.2e-14 82.4 104 41.3
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 7.6e-13 78.6 65 61.5
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.2e-12 77.0 182 41.8
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 3.5e-10 69.7 98 35.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.9e-09 66.2 167 37.7
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.9e-08 63.9 41 65.9
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 7.3e-08 62.0 89 43.8
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.6e-07 60.8 37 70.3
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 3.6e-07 59.7 183 35.5
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-06 58.2 41 73.2


User provided reference genes

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