Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1742.6 850 100.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1639.0 859 94.1
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1465.7 857 84.0
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1359.4 830 80.2
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1350.1 829 80.0
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1346.6 854 78.0
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1318.1 836 77.8
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1316.6 829 78.8
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1315.4 829 78.6
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1312.0 828 78.4
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1308.1 831 78.3
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1307.7 831 77.6
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1307.4 829 78.3
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1305.8 836 77.4
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1302.0 837 77.9
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1300.4 788 80.1
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1296.6 850 76.4
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1287.7 769 81.5
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1285.4 761 81.2
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1282.7 844 75.2
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1278.5 839 76.0
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1267.7 836 75.0
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1264.2 846 74.9
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1263.1 703 86.9
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1261.5 855 74.4
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1260.4 773 79.0
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1253.8 767 78.5
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1252.3 831 74.0
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1244.2 781 77.2
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1242.3 775 78.2
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1241.9 772 78.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1241.9 833 73.7
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1241.5 831 74.7
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1239.9 861 73.2
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1236.5 815 74.2
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1236.5 823 74.5
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1236.5 806 75.9
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1236.1 828 74.5
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1232.2 873 72.3
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1231.5 760 77.9
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1229.2 841 73.2
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1226.8 782 76.3
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1223.8 761 77.8
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 781 75.4
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1219.5 781 76.3
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1219.1 821 73.1
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 848 72.1
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 764 76.7
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 767 76.5
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 781 74.9
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1207.2 884 69.7
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1201.8 826 72.9
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1201.4 765 76.3
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 772 75.4
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1197.6 827 72.7
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 778 75.1
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 831 71.5
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 807 72.2
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 750 76.5
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1191.0 831 71.2
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1175.6 834 70.7
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1174.1 792 73.5
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 819 71.2
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1167.5 851 69.6
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1166.4 819 71.3
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1165.6 751 74.8
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1164.4 819 71.3
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 820 71.5
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1163.7 822 71.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 819 71.4
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1161.7 818 70.9
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 822 71.4
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 821 71.1
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1161.0 698 79.9
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1158.3 844 69.5
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1157.1 819 70.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1154.8 821 71.0
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1152.5 823 70.5
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1143.3 764 72.8
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1134.8 771 73.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1121.3 811 69.9
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1117.1 793 69.7
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1112.1 673 79.0
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1110.9 707 76.4
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1105.1 776 71.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1095.5 839 65.8
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 5.8e-312 1074.7 697 74.6
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 5.2e-311 1070.8 877 62.3
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.8e-308 1062.4 635 80.2
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 3.3e-305 1051.6 883 61.9
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 1.8e-303 1045.8 695 73.4
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.8e-303 1045.8 760 67.0
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.4e-276 956.4 758 61.6
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 6.2e-272 941.0 751 59.8
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.4e-270 935.3 621 73.4
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.1e-260 903.7 763 57.8
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 3.9e-258 895.2 654 66.5
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 2.1e-248 862.8 699 63.1
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.0e-242 842.4 639 63.8
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-223 778.1 688 55.1
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 8.2e-216 754.6 533 68.3
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.8e-162 577.4 901 39.2
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.6e-158 564.3 613 52.0
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 2.2e-144 517.3 354 67.2
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.3e-120 438.3 356 64.0
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 1.5e-92 345.1 272 59.9
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-86 323.2 299 59.2
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 2.2e-75 288.1 236 63.6
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.6e-73 280.4 269 57.2
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.9e-59 234.6 148 73.6
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 2.8e-46 191.4 122 73.0
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 1.5e-44 185.7 144 60.4
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 9.3e-42 176.4 133 65.4
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 8.1e-30 136.7 104 65.4
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 7.6e-28 130.2 163 47.2
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 2.4e-26 125.2 98 64.3
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 1.6e-25 122.5 114 51.8
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.9e-18 99.0 119 52.1
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 4.2e-18 97.8 62 75.8
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 6.7e-16 90.5 56 80.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 4.1e-13 81.3 47 80.9
TWI23G1065 Tripterygium wilfordii HOM05D000161 ORTHO05D414009 1.2e-12 79.7 94 57.4
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 4.2e-10 71.2 43 69.8
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 7.9e-09 67.0 41 78.0
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 1.1e-07 63.2 70 51.4
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 7.4e-07 60.5 59 61.0


User provided reference genes

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