Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.4e-231 804.7 412 100.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.1e-225 785.4 412 96.8
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.1e-208 729.9 410 88.3
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 3.1e-200 701.8 411 85.9
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.3e-198 696.4 412 82.5
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 1.7e-198 696.0 413 83.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.1e-197 693.3 412 82.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.2e-196 689.9 412 82.5
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 1.6e-196 689.5 411 83.5
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 4.6e-196 688.0 412 81.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.0e-195 685.3 412 81.8
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.9e-194 682.6 409 81.4
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.3e-194 681.8 414 81.9
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.3e-193 679.9 412 80.1
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.3e-193 679.9 412 80.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.6e-193 679.5 412 80.6
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.1e-193 679.1 412 80.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.8e-193 677.9 412 80.6
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.1e-193 677.2 412 80.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 1.1e-192 676.8 415 81.9
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 80.1
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 2.4e-192 675.6 411 80.0
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.1e-192 675.2 413 80.6
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.0e-192 674.9 414 81.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 6.9e-192 674.1 413 81.4
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.2e-191 673.3 413 80.1
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 2.0e-191 672.5 412 80.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.6e-191 672.2 413 81.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 9.9e-191 670.2 412 79.1
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.3e-190 669.8 414 80.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.2e-190 669.1 414 79.2
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 3.8e-190 668.3 412 81.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.4e-189 666.4 412 80.1
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.9e-189 666.0 416 80.3
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.9e-189 666.0 414 79.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.4e-189 665.6 416 79.3
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 2.4e-189 665.6 412 79.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.3e-189 663.7 416 79.8
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.2e-188 663.3 411 80.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.6e-188 662.9 417 78.9
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.6e-188 662.9 415 80.0
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.1e-188 662.5 413 79.4
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.1e-188 662.5 410 79.5
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.5e-188 661.8 412 78.6
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.6e-188 661.4 412 77.9
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.0e-188 661.0 412 77.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.3e-187 659.8 412 79.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.7e-187 659.4 413 79.2
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.0e-187 658.7 412 78.2
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.9e-187 658.3 415 79.0
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.9e-187 658.3 410 77.6
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.5e-186 655.6 412 75.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 7.3e-186 654.1 408 79.7
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 9.6e-186 653.7 415 79.8
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 6.2e-185 651.0 412 77.4
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.4e-184 649.8 410 78.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.8e-184 649.4 415 78.3
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.4e-184 649.0 413 77.5
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 6.9e-184 647.5 412 78.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.0e-183 646.0 412 76.2
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 3.4e-183 645.2 414 76.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 4.5e-183 644.8 408 77.9
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-182 643.3 413 77.2
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.3e-182 643.3 413 77.0
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.7e-182 642.9 413 77.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 3.8e-182 641.7 445 73.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 2.4e-181 639.0 412 75.0
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 7.1e-181 637.5 413 76.5
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.6e-180 636.3 455 70.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.1e-180 636.0 413 76.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 2.7e-180 635.6 412 76.5
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 4.6e-180 634.8 412 76.2
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.0e-180 634.4 413 76.0
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 7.9e-180 634.0 414 76.6
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.8e-179 632.9 414 76.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.0e-179 632.1 413 75.8
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 6.7e-179 630.9 413 76.0
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 3.3e-178 628.6 409 74.8
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 5.6e-178 627.9 409 75.1
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.6e-178 627.9 411 75.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 7.4e-178 627.5 412 74.5
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 9.6e-178 627.1 409 75.6
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 9.6e-178 627.1 409 74.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 9.6e-178 627.1 417 74.6
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.3e-177 626.7 408 75.5
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.8e-177 625.5 412 74.8
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.8e-177 625.5 409 74.6
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.8e-177 625.5 479 66.8
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 3.7e-177 625.2 409 74.8
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 3.7e-177 625.2 409 74.8
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 4.8e-177 624.8 413 74.1
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 8.1e-177 624.0 413 73.1
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.4e-176 622.5 410 73.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 3.1e-176 622.1 403 78.9
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 409 74.6
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 414 73.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 414 74.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 2.0e-175 619.4 412 74.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.6e-175 619.0 413 74.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.6e-175 619.0 409 75.1
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.4e-175 618.6 414 73.7
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.5e-174 614.4 414 72.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.5e-173 612.5 409 73.8
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.5e-173 612.5 409 73.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.5e-173 611.3 412 72.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 9.3e-173 610.5 417 71.9
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.3e-171 605.9 412 71.4
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 7.4e-170 600.9 508 63.0
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.4e-168 595.9 413 70.9
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.4e-168 595.9 410 71.0
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 9.0e-168 594.0 415 70.6
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.2e-167 593.6 420 72.1
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.2e-165 585.5 464 64.2
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.0e-159 566.2 418 68.4
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 2.6e-159 565.8 428 66.4
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.4e-155 553.5 350 78.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 6.3e-153 544.7 410 65.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.1e-146 523.9 329 77.2
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.8e-144 516.5 306 81.4
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.5e-143 512.3 332 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 5.2e-139 498.4 410 59.5
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.3e-137 493.8 410 59.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 8.5e-134 481.1 348 69.8
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.4e-131 473.8 410 58.3
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.4e-130 469.2 334 69.8
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 3.4e-130 469.2 419 58.7
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.1e-128 461.1 421 57.2
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 8.5e-126 454.5 421 56.3
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 4.3e-109 399.1 234 81.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 5.4e-104 382.1 243 76.1
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 6.0e-87 325.5 431 44.3
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.0e-75 285.0 388 43.8
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-74 284.3 181 76.8
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 5.8e-74 282.3 240 62.1
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.4e-64 250.4 328 42.4
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.5e-53 214.5 182 63.2
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.4e-48 198.0 241 50.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 4.3e-45 186.4 113 81.4
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.3e-36 158.3 125 60.0
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.8e-36 157.1 219 41.6
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 2.0e-29 134.4 80 77.5
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 8.2e-28 129.0 84 70.2
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 2.9e-25 120.6 84 66.7
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 1.6e-23 114.8 183 43.7
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.8e-22 111.3 91 63.7
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.8e-22 111.3 91 63.7
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 8.8e-22 109.0 74 67.6
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 8.8e-22 109.0 74 67.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.5e-21 108.2 90 62.2
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 5.7e-21 106.3 74 66.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 7.5e-21 105.9 91 62.6
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.8e-20 104.0 82 64.6
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.8e-17 93.6 81 56.8
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.9e-16 91.3 66 63.6
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.2e-15 88.6 73 57.5
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.2e-13 82.0 65 58.5
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 8.3e-12 75.9 59 62.7
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 7.0e-11 72.8 111 41.4
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 9.1e-11 72.4 111 40.5
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.2e-10 72.0 86 46.5


User provided reference genes

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