Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04565 Corylus avellana HOM05D000173 ORTHO05D013392 8.1e-28 126.3 63 100.0
ATR0737G114 Amborella trichopoda HOM05D000173 ORTHO05D004400 2.8e-20 101.3 58 91.4
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.7e-20 100.9 56 94.6
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 4.8e-20 100.5 56 94.6
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 4.8e-20 100.5 56 94.6
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 4.8e-20 100.5 56 94.6
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 1.1e-19 99.4 56 92.9
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 1.4e-19 99.0 56 92.9
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.4e-19 99.0 56 92.9
ClCG06G014940 Citrullus lanatus HOM05D000173 ORTHO05D004400 2.4e-19 98.2 56 91.1
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 2.4e-19 98.2 56 91.1
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 2.4e-19 98.2 56 91.1
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 92.9
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 3.1e-19 97.8 56 91.1
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 4.1e-19 97.4 56 91.1
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 4.1e-19 97.4 56 91.1
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 4.1e-19 97.4 52 96.2
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 4.1e-19 97.4 56 91.1
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 5.3e-19 97.1 56 91.1
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 5.3e-19 97.1 56 89.3
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 5.3e-19 97.1 56 91.1
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 5.3e-19 97.1 56 89.3
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 5.3e-19 97.1 56 91.1
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 6.9e-19 96.7 56 91.1
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 6.9e-19 96.7 56 91.1
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 6.9e-19 96.7 56 91.1
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 6.9e-19 96.7 56 91.1
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 9.0e-19 96.3 56 91.1
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 9.0e-19 96.3 56 89.3
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 9.0e-19 96.3 56 89.3
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
Sabra15G0075200 Salix brachista HOM05D000173 ORTHO05D004400 1.2e-18 95.9 56 89.3
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 87.5
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 1.5e-18 95.5 56 89.3
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 87.5
arahy.Tifrunner.gnm1.ann1.DFGQ2J Arachis hypogaea HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 85.7
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 85.7
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 89.3
Ciclev10020836m.g Citrus clementina HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 89.3
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 87.5
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 87.5
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 89.3
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 2.0e-18 95.1 56 89.3
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 2.6e-18 94.7 56 87.5
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 2.6e-18 94.7 56 85.7
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 3.4e-18 94.4 56 87.5
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 3.4e-18 94.4 56 87.5
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 3.4e-18 94.4 56 87.5
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 4.5e-18 94.0 56 85.7
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 5.9e-18 93.6 56 85.7
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 7.6e-18 93.2 56 85.7
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 7.6e-18 93.2 56 85.7
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 7.6e-18 93.2 56 85.7
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 7.6e-18 93.2 56 85.7
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 87.5
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 83.9
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 85.7
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 87.5
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 85.7
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 1.0e-17 92.8 56 87.5
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 1.3e-17 92.4 56 85.7
VMungo0251G1487 Vigna mungo HOM05D000173 ORTHO05D004400 1.7e-17 92.0 52 92.3
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 2.2e-17 91.7 56 85.7
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 2.2e-17 91.7 56 85.7
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 2.2e-17 91.7 56 85.7
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 2.2e-17 91.7 56 85.7
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 2.9e-17 91.3 56 83.9
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 2.9e-17 91.3 61 83.6
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 2.9e-17 91.3 56 85.7
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 2.9e-17 91.3 56 82.1
Medtr8g007440 Medicago truncatula HOM05D000173 ORTHO05D004400 2.9e-17 91.3 55 85.5
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 2.9e-17 91.3 56 83.9
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 3.8e-17 90.9 56 85.7
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 3.8e-17 90.9 56 82.1
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 3.8e-17 90.9 56 83.9
Sabra15G0073100 Salix brachista HOM05D000173 ORTHO05D004400 5.0e-17 90.5 52 90.4
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 8.5e-17 89.7 56 82.1
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 8.5e-17 89.7 56 82.1
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 8.5e-17 89.7 56 82.1
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.1e-16 89.4 56 83.9
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.1e-16 89.4 56 82.1
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 1.1e-16 89.4 56 82.1
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 1.4e-16 89.0 56 80.4
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 1.4e-16 89.0 56 82.1
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 2.5e-16 88.2 56 80.4
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 2.5e-16 88.2 56 80.4
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 4.2e-16 87.4 56 80.4
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 4.2e-16 87.4 56 80.4
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 4.2e-16 87.4 56 80.4
Glyma.05G232900 Glycine max HOM05D000173 ORTHO05D004400 5.5e-16 87.0 59 79.7
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 9.3e-16 86.3 70 71.4
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 1.6e-15 85.5 56 80.4
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 2.1e-15 85.1 56 78.6
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 2.7e-15 84.7 56 75.0
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 6.1e-15 83.6 56 80.4
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 7.9e-15 83.2 56 78.6
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.8e-14 82.0 56 78.6
CSS0036356 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D013392 2.4e-11 71.6 42 88.1
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 3.4e-10 67.8 41 82.9
Haze_26538 Corylus avellana HOM05D000173 ORTHO05D000316 1.7e-09 65.5 52 57.7
Cre06.g249200 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D004400 3.2e-08 61.2 52 53.8
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 9.4e-08 59.7 52 53.8
C08p43400 Brassica napus HOM05D000173 ORTHO05D013392 6.1e-07 57.0 36 77.8
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 6.1e-07 57.0 36 77.8
Actinidia18939 Actinidia chinensis HOM05D000173 ORTHO05D013392 7.9e-07 56.6 36 80.6
Haze_27645 Corylus avellana HOM05D000173 ORTHO05D000316 7.9e-07 56.6 52 50.0
CARHR067020 Cardamine hirsuta HOM05D000173 ORTHO05D004400 1.8e-06 55.5 35 80.0
Cfa022845 Carpinus fangiana HOM05D000173 ORTHO05D000316 3.9e-06 54.3 52 48.1
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 5.1e-06 53.9 36 75.0
Cre03.g176833 Chlamydomonas reinhardtii HOM05D000173 ORTHO05D000316 5.1e-06 53.9 56 44.6
Eucgr.H03447 Eucalyptus grandis HOM05D000173 ORTHO05D000316 5.1e-06 53.9 56 46.4
Eucgr.E01137 Eucalyptus grandis HOM05D000173 ORTHO05D000316 6.7e-06 53.5 56 44.6
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 6.7e-06 53.5 52 48.1
PGSC0003DMG400037659 Solanum tuberosum HOM05D000173 ORTHO05D000316 6.7e-06 53.5 52 50.0
ATR0006G089 Amborella trichopoda HOM05D000173 ORTHO05D000316 8.8e-06 53.1 56 48.2
Ciclev10008652m.g Citrus clementina HOM05D000173 ORTHO05D000316 8.8e-06 53.1 56 46.4
PSO832G3014 Papaver somniferum HOM05D000173 ORTHO05D000316 8.8e-06 53.1 56 42.9
SEGI_15252 Sequoiadendron giganteum HOM05D000173 ORTHO05D000316 8.8e-06 53.1 56 44.6
SEGI_35605 Sequoiadendron giganteum HOM05D000173 ORTHO05D000316 8.8e-06 53.1 56 44.6


User provided reference genes

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