Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 3859.3 1987 100.0
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 3431.0 1878 95.2
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 3110.5 1882 86.1
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 3089.7 1893 86.3
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2854.7 1868 78.8
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2847.0 1883 79.7
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2823.1 1856 79.6
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2818.1 1875 78.7
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2783.4 1875 78.4
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2780.7 1869 78.3
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2780.4 1863 78.3
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 2773.8 1873 78.4
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2771.1 1882 77.4
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2768.0 1889 77.4
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2765.3 1855 78.3
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2762.3 1882 77.9
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2762.3 1881 77.9
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2758.0 1866 77.5
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 2753.0 1877 77.2
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2746.8 1884 77.0
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2744.1 1876 77.3
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2728.4 1854 77.8
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2725.7 1876 76.7
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2712.9 1856 76.9
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2704.1 1856 76.8
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2698.3 1874 75.5
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2695.2 1886 76.2
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2676.4 1898 75.7
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2672.5 1878 73.7
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2671.3 1876 75.1
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2669.0 1890 75.5
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2664.8 1877 74.5
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2664.0 1883 75.6
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2655.2 1878 74.4
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2650.5 1877 74.5
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2647.8 1890 75.6
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2647.8 1878 74.4
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2635.5 1873 74.1
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2627.4 1942 72.1
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2622.4 1875 74.2
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2604.7 1876 72.7
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2603.2 1876 73.0
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2582.0 1880 73.1
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2577.0 1880 72.3
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2571.6 1888 73.6
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2568.1 1875 72.8
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2563.5 1887 72.7
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2563.5 1887 72.7
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2544.2 1879 73.0
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2541.5 1896 72.7
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2517.7 1889 71.5
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2513.0 1878 72.2
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2508.0 1946 69.4
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2503.4 1880 70.2
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2495.3 1849 71.3
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2494.2 1874 70.8
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2491.8 1880 70.2
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2486.1 1840 72.6
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2477.6 1873 70.3
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2434.1 1875 69.9
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2427.5 1881 70.0
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2403.2 1879 69.0
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2398.6 1873 69.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2381.7 1876 68.7
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2379.7 1875 69.0
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2379.4 1878 68.6
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2373.6 1876 68.6
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2350.5 1881 67.5
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2348.9 1871 67.6
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2333.1 1766 70.0
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2319.3 1895 66.0
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2305.4 1878 66.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2294.2 1875 66.9
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2285.0 1869 66.5
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2248.0 1867 66.5
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2220.7 1869 66.4
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2204.5 1879 64.6
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2179.4 1880 64.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2174.4 1878 64.5
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2172.1 1875 63.9
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2170.6 1871 64.6
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2152.9 1872 63.5
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2152.1 1875 64.1
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2132.5 1877 63.3
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2132.5 1795 64.7
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2125.5 1874 63.6
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2117.8 1872 61.9
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2083.5 1907 60.2
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2062.3 1879 63.0
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2027.3 1572 71.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2015.4 1868 61.7
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 2012.7 1871 61.4
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 2012.7 1871 61.4
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 2001.5 1889 60.9
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1974.1 1372 74.9
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1965.7 1873 59.2
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1854.7 1883 55.7
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1825.8 1343 72.2
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1820.4 1351 71.4
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1814.7 1224 77.4
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1809.3 1883 54.0
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1806.2 1529 64.8
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1734.2 1841 54.8
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1726.1 1746 56.4
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1627.1 1407 63.3
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1617.8 1314 65.8
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1595.1 1200 70.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1516.9 1842 51.1
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1362.1 2037 43.2
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1323.5 1247 61.3
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1276.5 1388 54.0
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1262.7 1035 66.0
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1246.1 1168 59.3
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1233.8 1881 42.7
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1204.5 877 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1191.4 1983 40.0
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1182.2 1986 39.4
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1161.0 2035 38.4
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.6e-270 936.4 1419 43.1
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 8.3e-259 898.7 1491 40.8
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 8.6e-240 835.5 521 81.8
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 8.3e-235 818.9 639 65.9
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 3.4e-212 743.8 608 65.5
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 7.6e-204 716.1 512 73.6
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 2.1e-193 681.4 560 66.4
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 2.5e-191 674.5 473 73.8
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.8e-189 668.3 490 74.3
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 6.7e-184 649.8 482 72.2
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 2.4e-173 614.8 357 85.7
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-168 599.0 416 76.4
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 1.2e-164 585.9 361 80.9
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.0e-164 585.1 428 67.1
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 6.5e-163 580.1 661 51.1
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 3.8e-155 554.3 373 79.6
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 4.7e-145 520.8 400 68.5
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 1.1e-141 509.6 441 64.4
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.5e-140 504.6 324 75.0
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 3.1e-133 481.5 426 64.3
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 2.3e-123 448.7 259 86.5
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 3.2e-109 401.7 302 77.2
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 4.3e-82 311.6 301 60.8
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 5.6e-82 311.2 302 60.6
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.2e-79 303.5 312 59.6
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 3.8e-54 218.8 131 82.4
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 3.7e-49 202.2 145 73.8
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 7.2e-21 108.2 91 63.7
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 1.4e-19 104.0 77 75.3
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 3.4e-18 99.4 756 21.4
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 2.2e-17 96.7 78 67.9
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 2.0e-15 90.1 77 63.6
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 5.0e-14 85.5 70 60.0
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.5e-13 84.0 70 58.6
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.9e-13 83.6 66 66.7
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.3e-13 82.8 77 58.4
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 9.5e-13 81.3 39 87.2
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 1.2e-12 80.9 34 100.0
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 2.8e-12 79.7 213 27.7
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 4.4e-10 72.4 96 47.9
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 5.4e-08 65.5 62 61.3
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 2.0e-07 63.5 192 31.2
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 7.8e-07 61.6 164 28.7
Nn3g17882 Nelumbo nucifera HOM05D004252 ORTHO05D005101 1.0e-06 61.2 70 58.6
Psat2g039160 Pisum sativum HOM05D000412 ORTHO05D000429 3.0e-06 59.7 58 55.2


User provided reference genes

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