Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 8.0e-219 763.5 381 100.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.9e-151 539.7 311 88.1
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 5.4e-143 511.5 312 82.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 7.9e-142 507.7 312 82.7
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 5.8e-137 491.5 373 69.2
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.2e-136 489.6 373 70.0
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 4.9e-128 461.8 380 65.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 8.4e-128 461.1 332 71.1
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.5e-127 459.5 380 64.2
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.6e-126 456.8 370 66.2
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 5.1e-125 451.8 363 66.1
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 8.7e-125 451.1 376 65.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.8e-123 446.0 378 63.8
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.1e-122 444.1 310 74.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.2e-120 436.4 372 64.0
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.2e-120 436.4 373 65.1
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 6.5e-120 434.9 358 64.8
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.5e-120 434.9 333 67.6
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-119 434.1 360 66.1
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.1e-119 434.1 375 61.6
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.4e-119 433.7 374 62.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 2.5e-119 433.0 373 63.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 5.5e-119 431.8 371 62.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 1.2e-118 430.6 370 62.2
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.2e-118 430.6 286 73.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 2.1e-118 429.9 376 63.3
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 2.1e-118 429.9 292 73.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 6.1e-118 428.3 356 64.0
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 7.9e-118 427.9 348 64.4
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.8e-117 426.8 350 66.6
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-117 426.4 355 65.1
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.1e-117 425.2 350 66.3
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 6.7e-117 424.9 376 60.9
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.7e-117 424.9 365 64.1
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 6.7e-117 424.9 369 62.6
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.5e-116 423.7 374 61.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 1.7e-115 420.2 356 64.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.8e-115 419.5 350 66.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 3.7e-115 419.1 305 69.2
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.8e-115 418.7 381 60.4
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.4e-114 417.2 388 58.5
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.4e-114 416.4 348 63.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 3.1e-114 416.0 365 61.9
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 6.9e-114 414.8 371 59.3
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.6e-113 412.9 376 59.6
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.4e-113 412.5 281 74.0
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 5.9e-113 411.8 366 60.1
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 7.7e-113 411.4 365 60.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.7e-112 410.2 378 59.5
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.7e-112 410.2 370 58.1
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.2e-112 409.8 323 65.3
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.2e-112 409.8 380 60.0
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 3.8e-112 409.1 388 58.2
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 5.0e-112 408.7 285 72.3
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 6.5e-112 408.3 272 72.8
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 8.5e-112 407.9 348 63.2
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 8.5e-112 407.9 315 67.0
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 2.5e-111 406.4 355 62.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 7.2e-111 404.8 305 65.6
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 9.4e-111 404.4 337 62.3
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.1e-110 403.3 279 70.3
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 2.7e-110 402.9 290 69.7
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 6.1e-110 401.7 282 70.9
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.8e-109 400.2 397 55.7
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 2.3e-109 399.8 283 70.3
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.0e-109 399.4 347 61.7
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.1e-109 398.7 280 70.4
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 6.7e-109 398.3 365 57.3
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-108 397.1 281 70.5
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 1.5e-108 397.1 357 57.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.6e-108 396.4 357 59.7
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 4.4e-108 395.6 300 67.0
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 5.7e-108 395.2 283 67.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 9.7e-108 394.4 422 53.1
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 9.7e-108 394.4 293 66.2
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.7e-107 393.7 324 63.9
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.7e-107 393.7 348 58.0
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.7e-107 393.7 317 63.1
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.7e-107 393.7 370 58.9
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.8e-107 392.9 321 60.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 3.7e-107 392.5 366 57.9
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 4.8e-107 392.1 340 59.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.8e-107 392.1 371 58.2
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 6.3e-107 391.7 269 73.2
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 6.3e-107 391.7 292 68.5
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.2e-107 391.3 251 76.9
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 8.2e-107 391.3 400 56.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.1e-106 391.0 348 57.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.4e-106 390.6 360 56.1
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.4e-106 390.6 276 68.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 1.8e-106 390.2 365 56.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 3.1e-106 389.4 273 71.4
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.2e-105 387.5 365 55.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.0e-104 384.4 288 64.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-104 384.4 356 61.0
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.3e-104 384.0 333 60.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-104 384.0 294 67.0
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.4e-103 380.6 366 55.2
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 1.4e-103 380.6 284 64.4
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.2e-103 379.4 283 64.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.2e-103 379.4 283 64.7
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 5.5e-103 378.6 280 65.0
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.6e-102 377.1 277 65.7
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.7e-102 376.3 282 64.5
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 2.7e-102 376.3 289 65.7
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 8.0e-102 374.8 282 64.2
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.0e-101 374.4 325 60.9
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.9e-101 372.5 280 67.9
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.5e-100 370.5 272 68.8
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 2.0e-100 370.2 282 63.8
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.8e-99 366.3 282 64.9
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 6.3e-99 365.2 430 50.9
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-96 357.5 302 65.2
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.9e-96 356.3 270 64.1
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.0e-96 355.5 267 64.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 1.1e-95 354.4 265 67.2
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 7.2e-95 351.7 265 66.4
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.0e-93 347.8 368 56.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 1.4e-90 337.4 307 58.6
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 4.1e-90 335.9 310 58.4
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 5.9e-89 332.0 203 76.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 5.0e-88 328.9 222 73.0
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 6.5e-88 328.6 270 60.4
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.5e-87 327.4 355 54.9
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 9.1e-82 308.1 242 67.8
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.0e-81 307.0 186 82.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 3.1e-69 266.5 298 47.3
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 3.4e-68 263.1 266 48.1
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 1.4e-66 257.7 273 46.5
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.4e-66 255.8 349 44.4
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 4.6e-65 252.7 284 53.5
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.5e-63 247.7 354 44.6
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.6e-63 245.7 183 71.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 8.0e-62 241.9 199 59.3
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.8e-61 240.7 296 44.9
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.3e-61 240.4 173 71.7
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 4.4e-60 236.1 170 71.8
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.9e-58 230.7 175 62.9
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 5.6e-55 219.2 155 71.6
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.4e-53 214.5 170 61.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.3e-51 208.0 173 64.2
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.6e-47 192.6 133 72.9
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.5e-44 184.5 140 65.7
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.8e-43 179.9 281 37.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.9e-43 179.5 284 38.0
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 7.8e-41 172.2 278 39.9
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 2.9e-35 153.7 94 71.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 8.4e-35 152.1 153 52.9
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 8.4e-35 152.1 190 51.6
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 1.5e-31 141.4 133 54.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 5.6e-31 139.4 81 75.3
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.2e-28 131.7 102 67.6
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.5e-28 129.8 257 32.7
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 2.7e-25 120.6 94 63.8
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 7.4e-23 112.5 78 61.5
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.8e-21 107.8 97 53.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 5.3e-21 106.3 64 75.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 1.5e-20 104.8 90 61.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.5e-20 104.8 80 66.2
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 1.0e-19 102.1 109 52.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 1.0e-19 102.1 109 52.3
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 9.3e-18 95.5 281 27.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.2e-17 95.1 89 60.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 5.3e-13 79.7 61 59.0
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 3.4e-12 77.0 48 77.1
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.7e-11 74.7 67 56.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 3.8e-11 73.6 48 66.7
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.9e-09 65.9 38 81.6
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 1.0e-08 65.5 53 56.6
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 3.0e-08 63.9 44 61.4


User provided reference genes

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