Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 8.3e-171 603.6 302 100.0
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.7e-142 508.4 300 87.3
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.2e-115 419.5 314 72.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 2.6e-111 406.0 288 75.0
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 5.9e-108 394.8 302 71.5
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.2e-106 389.0 304 70.1
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 3.6e-105 385.6 305 68.2
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.4e-104 383.6 217 88.0
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.5e-103 380.2 218 87.2
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 2.6e-103 379.4 219 87.7
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.6e-103 379.4 216 87.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.6e-103 379.4 219 86.8
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 9.7e-103 377.5 303 67.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.3e-102 377.1 245 78.4
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 2.2e-102 376.3 217 87.1
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.2e-102 376.3 219 85.8
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.1e-101 374.0 218 83.9
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.4e-101 373.6 302 67.9
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.8e-101 373.2 219 85.4
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 7.0e-101 371.3 300 67.3
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.6e-100 370.2 303 66.3
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.0e-100 369.8 213 86.4
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.6e-100 369.4 217 84.3
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 4.5e-100 368.6 219 84.0
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 6.5e-99 364.8 217 84.3
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.5e-98 363.6 258 74.4
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 4.2e-98 362.1 219 82.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 7.2e-98 361.3 306 65.4
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.2e-97 360.5 221 81.4
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.6e-97 360.1 219 81.7
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 3.6e-97 359.0 221 81.0
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.0e-96 357.5 215 84.2
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.0e-96 357.5 214 83.2
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 4.0e-96 355.5 205 85.9
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 4.0e-96 355.5 214 81.8
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 5.2e-96 355.1 219 79.5
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 8.8e-96 354.4 218 81.7
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.5e-95 353.6 215 82.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 2.6e-95 352.8 304 65.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 7.5e-95 351.3 223 78.5
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 7.5e-95 351.3 217 80.2
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 9.8e-95 350.9 216 81.5
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.7e-94 350.1 220 77.3
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.7e-94 350.1 218 81.7
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 2.8e-94 349.4 218 78.0
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 3.7e-94 349.0 232 76.7
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.8e-94 348.6 219 81.3
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 8.3e-94 347.8 219 79.0
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 8.3e-94 347.8 211 80.6
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 8.3e-94 347.8 220 78.6
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.1e-93 347.4 216 79.2
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.1e-93 347.4 219 79.0
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.1e-93 347.4 219 79.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.1e-93 347.4 218 77.5
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 4.1e-93 345.5 237 74.3
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.1e-93 345.5 217 78.8
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 5.4e-93 345.1 205 84.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 5.4e-93 345.1 211 80.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 7.0e-93 344.7 217 77.4
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 9.1e-93 344.4 218 78.0
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 9.1e-93 344.4 216 79.2
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 9.1e-93 344.4 219 79.0
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.1e-93 344.4 222 76.6
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.2e-92 344.0 218 77.1
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 1.6e-92 343.6 227 77.5
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.0e-92 343.2 217 78.3
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 2.0e-92 343.2 217 78.3
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-92 342.8 218 77.5
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 2.7e-92 342.8 233 74.7
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 3.5e-92 342.4 202 83.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 4.5e-92 342.0 241 73.9
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 4.5e-92 342.0 217 77.9
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.0e-91 340.9 216 78.2
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.0e-91 340.9 216 78.7
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.7e-91 340.1 216 78.7
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.2e-91 339.7 223 76.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 6.5e-91 338.2 214 79.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.5e-90 337.0 217 76.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 5.5e-90 335.1 216 78.7
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.2e-90 334.7 220 77.7
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 7.2e-90 334.7 220 77.7
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 9.4e-90 334.3 233 73.0
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.2e-89 334.0 224 75.9
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.2e-89 334.0 211 77.3
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 1.6e-89 333.6 220 77.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 3.6e-89 332.4 307 60.6
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 4.7e-89 332.0 220 75.9
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 6.1e-89 331.6 217 77.9
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.4e-88 330.5 228 75.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 2.3e-88 329.7 220 76.4
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 4.0e-88 328.9 212 78.3
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.5e-87 327.0 205 77.6
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 2.0e-87 326.6 207 76.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 7.5e-87 324.7 217 75.6
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 7.5e-87 324.7 187 84.5
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.3e-86 323.9 223 74.0
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.7e-86 323.6 214 77.6
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 6.3e-86 321.6 220 75.9
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 6.3e-86 321.6 223 74.9
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.4e-85 319.7 231 71.9
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.4e-85 318.5 235 70.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.5e-84 315.8 203 77.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.3e-83 313.2 220 72.3
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 3.8e-83 312.4 178 85.4
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 5.2e-80 302.0 215 69.8
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.7e-78 297.0 192 77.6
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 5.0e-75 285.4 209 65.6
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 6.8e-72 275.0 202 71.8
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.5e-71 273.9 212 63.7
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 8.6e-67 258.1 215 61.4
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 4.4e-63 245.7 179 63.7
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 3.6e-57 226.1 180 59.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.1e-52 210.3 135 75.6
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.0e-47 193.7 111 85.6
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.6e-47 193.4 149 65.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 7.6e-47 191.8 216 47.2
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 4.3e-42 176.0 184 49.5
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 4.0e-24 116.3 190 36.3
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 3.8e-22 109.8 78 71.8
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.2e-21 106.7 75 74.7
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.7e-18 95.9 56 80.4
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 6.7e-11 72.4 65 56.9
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 4.3e-10 69.7 107 41.1
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 3.1e-08 63.5 209 25.4
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 6.9e-08 62.4 208 26.4
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 6.9e-08 62.4 176 25.6
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.0e-07 60.8 177 26.6
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 4.5e-07 59.7 225 24.4
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 4.5e-07 59.7 192 25.0
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 5.9e-07 59.3 209 24.4
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 5.9e-07 59.3 176 24.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 7.7e-07 58.9 178 23.6
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 1.0e-06 58.5 178 23.6
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.3e-06 58.2 178 24.2
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 2.2e-06 57.4 210 21.9
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 2.2e-06 57.4 187 25.1
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 2.9e-06 57.0 203 24.1
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 3.8e-06 56.6 205 24.9
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 5.0e-06 56.2 203 24.1
Lj5g0017951 Lotus japonicus HOM05D002933 ORTHO05D009221 5.0e-06 56.2 177 24.9
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 5.0e-06 56.2 178 24.2
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 5.0e-06 56.2 180 25.0
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 5.0e-06 56.2 177 27.1
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 5.0e-06 56.2 176 24.4
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 6.5e-06 55.8 235 23.8
PSO339G0478 Papaver somniferum HOM05D002933 ORTHO05D009221 6.5e-06 55.8 210 21.0
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 8.5e-06 55.5 178 25.3


User provided reference genes

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